Browse Element(s) Details


OsAffx.18485.5.S1_at

Description tigr:9631.m00784
TID=OsAffx.18485.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0842010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18485.5.S1_at--632--8191Chr03:4299994..4300018 (25 bp)
GGAATGCAAATGTGCCTTGCTTGGT
LOC_Os03g08420
OsAffx.18485.5.S1_at--795--3291Chr03:4300000..4300024 (25 bp)
CAAATGTGCCTTGCTTGGTGAGGAA
LOC_Os03g08420
OsAffx.18485.5.S1_at--1060--7831Chr03:4300051..4300075 (25 bp)
GGTAGTCATCGATGGAGTACTCAAC
LOC_Os03g08420
OsAffx.18485.5.S1_at--183--9371Chr03:4300059..4300083 (25 bp)
TCGATGGAGTACTCAACGAGGGTGT
LOC_Os03g08420
OsAffx.18485.5.S1_at--867--1871Chr03:4300074..4300098 (25 bp)
ACGAGGGTGTGGACGTCCTTGCCAT
LOC_Os03g08420
OsAffx.18485.5.S1_at--332--1911Chr03:4300086..4300110 (25 bp)
ACGTCCTTGCCATACCTGAAGAGGG
LOC_Os03g08420
OsAffx.18485.5.S1_at--815--1111NONE
AGTGTTGGTCGTGGATTGAAATTGA
NONE
OsAffx.18485.5.S1_at--685--1351Chr03:4301452..4301476 (25 bp)
AGAGAGGCCCTAAATGATAACATGA
LOC_Os03g08420
OsAffx.18485.5.S1_at--1089--8011Chr03:4301477..4301501 (25 bp)
GGAGGAGTATCATTTATCACCTATT
LOC_Os03g08420
OsAffx.18485.5.S1_at--515--10171Chr03:4301491..4301515 (25 bp)
TATCACCTATTGACTGCAAACCTCA
LOC_Os03g08420
OsAffx.18485.5.S1_at--488--5711Chr03:4301502..4301526 (25 bp)
GACTGCAAACCTCATGTTAGTTAAC
LOC_Os03g08420
Target Sequence 
GGAATGCAAATGTGCCTTGCTTGGTGAGGAAGGTATAGAAATCAATGTTGGGGTAGAGGTAGTCATCGATGGAGTACTCA
ACGAGGGTGTGGACGTCCTTGCCATACCTGAAGAGGGCAGGGAGAAAGAAGGCGACAACGAGGGTGGTGACTGGGGAAGT
GGGGAGCGACATGCTACGGCAAGGAAGGAGCAGCTAGAGGAGGAAGGGAGTGTTGGTCGTGGATTGAAATTGAGAGAGGC
CCTAAATGATAACATGAGGAGGAGTATCATTTATCACCTATTGACTGCAAACCTCATGTTAGTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18485.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis