Browse Element(s) Details


Os.51434.1.S1_at

Description gb:AK062793.1
DB_XREF= gi:32972811
TID=Os.51434.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C05, full insert sequence.
FL= gb:AK067102.1 gb:AK062793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2224911/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22200Os.14491.2.S1_x_at4/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.47463.1.S1_x_at3/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.41934.1.A1_x_at2/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22209OsAffx.23333.1.S1_at11/111+12470043..12472887hypothetical protein
LOC_Os01g22209OsAffx.23333.2.S1_x_at10/111+12470043..12472887hypothetical protein
LOC_Os01g22220OsAffx.23332.2.A1_at11/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.25889.2.S1_at10/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.1923.1.S1_at1/111+12474474..12477137hypothetical protein
LOC_Os01g22230Os.35123.1.S1_at11/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22230Os.1559.1.S1_x_at2/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22249Os.17722.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.51434.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.38751.1.A1_at4/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_x_at3/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.1559.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.9790.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.1197.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.49802.1.S2_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.916.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22270Os.46012.2.S1_x_at8/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.27088.1.A1_x_at5/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.46012.3.S1_x_at4/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22280NANA1+12511354..12513402retrotransposon protein, putative, unclassified
LOC_Os01g22289NANA1+12516600..12516863hypothetical protein
LOC_Os01g22300NANA1+12519025..12520374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22309NANA1+12523828..12524091hypothetical protein
LOC_Os01g22320Os.45902.1.A1_x_at4/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22320Os.56372.1.S1_at1/111+12525855..12527244transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51434.1.S1_at--190--3811Chr01:12493035..12493059 (25 bp)
CTCCGTTTTCCTTGCGGGAGAGATT
LOC_Os01g22249
Os.51434.1.S1_at--457--151Chr01:12493057..12493081 (25 bp)
ATTAGTTCCCATCCCTGCTACTGAA
LOC_Os01g22249
Os.51434.1.S1_at--118--6411Chr01:12493135..12493159 (25 bp)
GATCGGCATATACGTACCGCTGTTT
LOC_Os01g22249
Os.51434.1.S1_at--1028--7311Chr01:12493194..12493218 (25 bp)
GTGCTCTCTATTACAATCACTGTGT
LOC_Os01g22249
Os.51434.1.S1_at--273--1471Chr01:12493264..12493288 (25 bp)
AGAAGGTATTACCATACTCCCTCCG
LOC_Os01g22249
Os.51434.1.S1_at--412--7131Chr01:12493345..12493369 (25 bp)
GTCATACCTCTCTAAAATCTCTAAT
LOC_Os01g22249
Os.51434.1.S1_at--1031--3831Chr01:12493469..12493493 (25 bp)
CTGAGCGGGCGACTAATTACATACT
LOC_Os01g22249
Os.51434.1.S1_at--252--9751Chr01:12493482..12493506 (25 bp)
TAATTACATACTAGTCGCCAGCTCC
LOC_Os01g22249
Os.51434.1.S1_at--991--2131Chr01:12493524..12493548 (25 bp)
ACAGTAGCAGCGCATGACCAGTTTC
LOC_Os01g22249
Os.51434.1.S1_at--120--1731Chr01:12493540..12493564 (25 bp)
ACCAGTTTCGGTTGAGCTCCAGTAG
LOC_Os01g22249
Os.51434.1.S1_at--834--8911Chr01:12493552..12493576 (25 bp)
TGAGCTCCAGTAGCTGCTCACTTCT
LOC_Os01g22249
Target Sequence 
CTCCGTTTTCCTTGCGGGAGAGATTAGTTCCCATCCCTGCTACTGAACACAGTTCAAGGGAGAGTTAGCTAAGATATATT
TATGATCATATGTTATGAAAGATCGGCATATACGTACCGCTGTTTTTTTAAAAAAAACAGATCACCTGAAGAAACATTAG
TGCTCTCTATTACAATCACTGTGTTAGAAACAAAATACAACCATGAANCAAAAAAATAAAAGGAACAGAAGAAGGTATTA
CCATACTCCCTCCGTCCCAAAATATAAAGAATTGGAGGGATATAACATAATATTCATACTAATAGGATATGTCATACCTC
TCTAAAATCTCTAATATATATTAGAGTAGGTATAATAGGTAAATTTTTGCTGGCTATATTGGGTCCAAACTGAATAAAAT
ACAGAGTTAGAGAAGAAATGAGTAGAAAGAGGGTCTGAGCGGGCGACTAATTACATACTAGTCGCCAGCTCCACACAGGC
TCCAATTCAACAGTAGCAGCGCATGACCAGTTTCGGTTGAGCTCCAGTAGCTGCTCACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis