Browse Element(s) Details


OsAffx.1923.1.S1_at

Description tigr:9629.m00308
TID=OsAffx.1923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0393011/11hypothetical protein
LOC_Os01g222201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1923.1.S1_at--1052--9291Chr01:1678549..1678573 (25 bp)
TCCGCGCTCGCTGGGTGGCTGACAA
LOC_Os01g03930
OsAffx.1923.1.S1_at--1075--3891Chr01:1678539..1678563 (25 bp)
CTGGGTGGCTGACAAGGGAGCTCCA
LOC_Os01g03930
OsAffx.1923.1.S1_at--106--9171Chr01:1678472..1678496 (25 bp)
TGCCGACGCGCCATGGAGATTGAGT
LOC_Os01g03930
OsAffx.1923.1.S1_at--519--7711Chr01:1678303..1678325 (23 bp)
GGGTGCCACATTACTGTCACGTAGG
LOC_Os01g03930
OsAffx.1923.1.S1_at--782--4391Chr01:1678299..1678323 (25 bp)
GCCACATTACTGTCACGTAGGACGA
LOC_Os01g03930
OsAffx.1923.1.S1_at--1092--132Chr01:1678294..1678318 (25 bp)
ATTACTGTCACGTAGGACGAAGACT
LOC_Os01g03930
OsAffx.1923.1.S1_at--557--7092Chr02:30138097..30138120 (24 bp)
GTCACGTAGGACGAAGACTAAGTCA
NONE
OsAffx.1923.1.S1_at--575--7091Chr01:1678267..1678291 (25 bp)
GTCAAAGCAACAAAGTAGGCGTCAT
LOC_Os01g03930
OsAffx.1923.1.S1_at--814--2192Chr01:11238969..11238988 (20 bp)
ACAAAGTAGGCGTCATGTCAGCCAA
NONE
OsAffx.1923.1.S1_at--784--1194Chr09:12018738..12018757 (20 bp)
AGTAGGCGTCATGTCAGCCAAAACC
NONE
OsAffx.1923.1.S1_at--703--8378Chr09:12018738..12018757 (20 bp)
GGCGTCATGTCAGCCAAAACCGTCA
NONE
Target Sequence 
TCCGCGCTCGCTGGGTGGCTGACAAGGGAGCTCCAGGAGGAAAGAAGGATAGCCAGGAGGGAGAGAGGAGAAGGAGGTGC
CGACGCGCCATGGAGATTGAGTGGGGTGCCACATTACTGTCACGTAGGACGAAGACTAAGTCAAAGCAACAAAGTAGGCG
TCATGTCAGCCAAAACCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis