Browse Element(s) Details


OsAffx.10898.1.S1_x_at

Description gb:NM_184229.1
DB_XREF= gi:34895549
TID=OsAffx.10898.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g039407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed
LOC_Os01g03960OsAffx.10899.1.S1_at11/111+1704341..1704741hypothetical protein
LOC_Os01g03970OsAffx.23105.1.S1_at8/111+1707041..1707352hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10898.1.S1_x_at--916--5531Chr01:1682682..1682706 (25 bp)
GAAACACTCCTCATTTCTATTCTAC
NONE
OsAffx.10898.1.S1_x_at--329--3331Chr01:1682678..1682702 (25 bp)
CACTCCTCATTTCTATTCTACTATA
NONE
OsAffx.10898.1.S1_x_at--194--9531Chr01:1682662..1682686 (25 bp)
TCTACTATACTACAAACACGGCCAC
NONE
OsAffx.10898.1.S1_x_at--359--9871Chr01:1682660..1682684 (25 bp)
TACTATACTACAAACACGGCCACAC
NONE
OsAffx.10898.1.S1_x_at--1022--10171Chr01:1682657..1682681 (25 bp)
TATACTACAAACACGGCCACACGCA
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--1028--3371Chr01:1682623..1682647 (25 bp)
CACCAAACGTCTATGCTGTGACGAA
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--263--3891Chr01:1682608..1682632 (25 bp)
CTGTGACGAACACCACCACCATGGA
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--710--1871Chr01:1682512..1682536 (25 bp)
ACGAGGTCTCCGACGCCGAGGTCGA
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--296--7211Chr01:1682492..1682516 (25 bp)
GTCGAGGAGTTCTACGCCATCCTCC
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--346--8391Chr01:1682404..1682428 (25 bp)
GGCGCCCCAGCTTCTCCTGGGAGGA
LOC_Os01g03940
OsAffx.10898.1.S1_x_at--47--4911Chr01:1682395..1682419 (25 bp)
GCTTCTCCTGGGAGGACTTCGCCGA
LOC_Os01g03940
Target Sequence 
GAAACACTCCTCATTTCTATTCTACTATACTACAAACACGGCCACACGCACCCACCCCCCACCAAACGTCTATGCTGTGA
CGAACACCACCACCATGGACGCCACCACCACCGCCAAGCGCAAGCGCCCAGCCGCCTCCGACATCGCCGACGACGCCCCC
ACCACCGTCGACGAGGTCTCCGACGCCGAGGTCGAGGAGTTCTACGCCATCCTCCGCCGCATGCGCGACGCCACCCGACG
GCTCGGCGCCCGCCCTCCCCCGCCGCGCGCGCCGGCGTGGCGCCCCAGCTTCTCCTGGGAGGACTTCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10898.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis