Browse Element(s) Details


Os.11240.1.S1_at

Description gb:AK060150.1
DB_XREF= gi:32970168
TID=Os.11240.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D04, full insert sequence.
FL= gb:AK061853.1 gb:AK060150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0391411/11Metal tolerance protein C3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11240.1.S1_at--997--7011Chr01:1670358..1670382 (25 bp)
GTACATGTTGTACCCATCTGAATTG
LOC_Os01g03914
Os.11240.1.S1_at--706--231Chr01:1670301..1670325 (25 bp)
ATATTTCCATTTCCGGTGGTCATGT
LOC_Os01g03914
Os.11240.1.S1_at--719--10051Chr01:1670249..1670273 (25 bp)
TAGTTTGTCATTAGCCCCAGGCATG
LOC_Os01g03914
Os.11240.1.S1_at--1032--4171Chr01:1670234..1670258 (25 bp)
CCCAGGCATGTCCATTCAAGTTAGC
LOC_Os01g03914
Os.11240.1.S1_at--578--9711Chr01:1670219..1670243 (25 bp)
TCAAGTTAGCTTGGGCCCTATCCAA
LOC_Os01g03914
Os.11240.1.S1_at--909--10531Chr01:1670125..1670149 (25 bp)
TTCTTGCTGGTTCGTTTTATTGGGC
LOC_Os01g03914
Os.11240.1.S1_at--934--4611Chr01:1670102..1670126 (25 bp)
GCGAGTTGCAGCTGGGTGTTACTAT
LOC_Os01g03914
Os.11240.1.S1_at--1148--7691Chr01:1670089..1670113 (25 bp)
GGGTGTTACTATGTGGGAGCCCTAA
LOC_Os01g03914
Os.11240.1.S1_at--730--8431Chr01:1670010..1670034 (25 bp)
GGCCATTGTAGCTGTGATCATCACT
LOC_Os01g03914
Os.11240.1.S1_at--699--4371Chr01:1669970..1669994 (25 bp)
CCACACCTTGTGTTGTTGCTTCTCA
LOC_Os01g03914
Os.11240.1.S1_at--627--31Chr01:1669836..1669860 (25 bp)
ATTGGTCATACGGTCATTGCCTGGG
LOC_Os01g03914
Target Sequence 
GTACATGTTGTACCCATCTGAATTGTCATATCTGTGATCAGAAGTACTACTATATATATATTTCCATTTCCGGTGGTCAT
GTCACTGGGGCAGTAGTGATGAACCGGANTAGTTTGTCATTAGCCCCAGGCATGTCCATTCAAGTTAGCTTGGGCCCTAT
CCAACTAGGGCAGAAAAACTCACAAAAATACAAAGGGCAAACCATGCATGAGGACAGTGCCTGTGACTTGTTGTTCTTGC
TGGTTCGTTTTATTGGGCGAGTTGCAGCTGGGTGTTACTATGTGGGAGCCCTAAGTGACAGGACAAATTATCAATAGCTT
CTTCAGCTGGAAGGAAAAGAAAGGACATGGCCATTGTAGCTGTGATCATCACTAGGATCCAAACAGCCCCCACACCTTGT
GTTGTTGCTTCTCATCGATCAGCTGGGATTGGAAAGAATCCAGTAATTTTTTTTTCACGAATGCGCAAAATGATTGCATG
TCAATATATTACAAGAAGACATAATATATTTTTAAACAATGCAATTGGTCATACGGTCATTGCCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis