Browse Element(s) Details


Os.19761.1.S1_at

Description gb:AK063966.1
DB_XREF= gi:32973984
TID=Os.19761.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.19761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence.
FL= gb:AK063966.1 gb:AK102309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0395011/11alpha-D-xylosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed
LOC_Os01g03960OsAffx.10899.1.S1_at11/111+1704341..1704741hypothetical protein
LOC_Os01g03970OsAffx.23105.1.S1_at8/111+1707041..1707352hypothetical protein
LOC_Os01g03980Os.3721.1.S1_at11/111+1708939..1709749expressed protein
LOC_Os01g03989NANA1+1715767..1716172hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19761.1.S1_at--477--8271Chr01:1699095..1699119 (25 bp)
GGCAGGCGACGTACGTCCGCTTCTA
LOC_Os01g03950
Os.19761.1.S1_at--57--6991Chr01:1699105..1699129 (25 bp)
GTACGTCCGCTTCTACGCGACGGTG
LOC_Os01g03950
Os.19761.1.S1_at--563--9251Chr01:1699194..1699218 (25 bp)
TCCTCATCGAGAAGCTGTCCGTGCT
LOC_Os01g03950
Os.19761.1.S1_at--528--7271Chr01:1699250..1699274 (25 bp)
GTCCATGTCGATGGCGCGAACGCCA
LOC_Os01g03950
Os.19761.1.S1_at--900--3531Chr01:1699279..1699303 (25 bp)
CATTGCAACGTCGAGGCCGTACTTT
LOC_Os01g03950
Os.19761.1.S1_at--759--4051Chr01:1699290..1699314 (25 bp)
CGAGGCCGTACTTTGCAGGTGCCGA
LOC_Os01g03950
Os.19761.1.S1_at--1134--8491Chr01:1699383..1699407 (25 bp)
TGGCATTGCCGCTGGGCAAGAGCTT
LOC_Os01g03950
Os.19761.1.S1_at--95--8231Chr01:1699397..1699421 (25 bp)
GGCAAGAGCTTCACCATGACTTGGA
LOC_Os01g03950
Os.19761.1.S1_at--992--671Chr01:1699412..1699436 (25 bp)
ATGACTTGGAACATGCAGATCGAAG
LOC_Os01g03950
Os.19761.1.S1_at--611--5391Chr01:1699445..1699469 (25 bp)
GAAGCTTTCTTATGCTTTCATCTGC
LOC_Os01g03950
Os.19761.1.S1_at--337--9071Chr01:1699457..1699481 (25 bp)
TGCTTTCATCTGCATTTCTCCATTC
LOC_Os01g03950
Target Sequence 
GGCAGGCGACGTACGTCCGCTTCTACGCGACGGTGCGCGGCAAGGCGGTGACGGTGAGGTCGGAGGTGGAGCTAGGCAGC
TACAGCTTGCAGAAGGGGCTCCTCATCGAGAAGCTGTCCGTGCTCGGACTGGAGGGAACAGGCAGGGACCTCGCCGTCCA
TGTCGATGGCGCGAACGCCACCGCCATTGCAACGTCGAGGCCGTACTTTGCAGGTGCCGAGGCGGAGCTGCACGGGCACC
GCGACGTGGAGGGACACAAGAAGAGCGTGATGGTGGAGGTGGGAGGGCTGGCATTGCCGCTGGGCAAGAGCTTCACCATG
ACTTGGAACATGCAGATCGAAGCATAGATCGAAGCTTTCTTATGCTTTCATCTGCATTTCTCCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis