Browse Element(s) Details


OsAffx.23105.1.S1_at

Description tigr:9629.m00312
TID=OsAffx.23105.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g039708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed
LOC_Os01g03960OsAffx.10899.1.S1_at11/111+1704341..1704741hypothetical protein
LOC_Os01g03970OsAffx.23105.1.S1_at8/111+1707041..1707352hypothetical protein
LOC_Os01g03980Os.3721.1.S1_at11/111+1708939..1709749expressed protein
LOC_Os01g03989NANA1+1715767..1716172hypothetical protein
LOC_Os01g04000NANA1+1728355..1728747hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23105.1.S1_at--213--9531Chr01:1707355..1707523 (25 bp)
TCTAGCCTTCGACGAGCCAGACGAA
NONE
OsAffx.23105.1.S1_at--919--3711Chr01:1707354..1707522 (25 bp)
CTAGCCTTCGACGAGCCAGACGAAG
NONE
OsAffx.23105.1.S1_at--200--10631Chr01:1707348..1707516 (25 bp)
TTCGACGAGCCAGACGAAGGATGGC
NONE
OsAffx.23105.1.S1_at--62--8571Chr01:1707315..1707339 (25 bp)
TGGATGAGGACTTCGCAAGGGCGGT
LOC_Os01g03970
OsAffx.23105.1.S1_at--557--4011Chr01:1707228..1707252 (25 bp)
CGTCGTTGTTGACCCGGCCGCTGTT
LOC_Os01g03970
OsAffx.23105.1.S1_at--693--8411Chr01:1707213..1707237 (25 bp)
GGCCGCTGTTAACAGCCCCGATGTG
LOC_Os01g03970
OsAffx.23105.1.S1_at--140--10491Chr01:1707205..1707229 (25 bp)
TTAACAGCCCCGATGTGCCCAGCTA
LOC_Os01g03970
OsAffx.23105.1.S1_at--773--4731Chr01:1707077..1707101 (25 bp)
GCTGTCAGGTGGGATCTACGTTGCT
LOC_Os01g03970
OsAffx.23105.1.S1_at--252--8731Chr01:1707075..1707099 (25 bp)
TGTCAGGTGGGATCTACGTTGCTTC
LOC_Os01g03970
OsAffx.23105.1.S1_at--1025--7071Chr01:1707074..1707098 (25 bp)
GTCAGGTGGGATCTACGTTGCTTCC
LOC_Os01g03970
OsAffx.23105.1.S1_at--1030--1031Chr01:1707071..1707095 (25 bp)
AGGTGGGATCTACGTTGCTTCCCAT
LOC_Os01g03970
Target Sequence 
TCTAGCCTTCGACGAGCCAGACGAAGGATGGCGGCGGCGATGGATGAGGACTTCGCAAGGGCGGTGGAGGACGACCTCAA
GCTGTCCAAGCGCCTCGTCCTCCCCGGCGGCCGCCCCCGCCCCGCCCCGTCGTTGTTGACCCGGCCGCTGTTAACAGCCC
CGATGTGCCCAGCTACCAGCCACACGTATACGGCCGCCTCGACCCGCCCTAGCTCATCCCACTCCACAGGCGTGAGNNNN
CNNNNNNNNNNCNNNNNANNGNNNNNNAGAGGGGAGGGGCTGTCAGGTGGGATCTACGTTGCTTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis