Browse Element(s) Details


Os.3721.1.S1_at

Description gb:AK105373.1
DB_XREF= gi:32990582
TID=Os.3721.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D04, full insert sequence.
FL= gb:AK105373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0398011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03950Os.19761.1.S1_at11/111+1695005..1699892alpha-D-xylosidase, putative, expressed
LOC_Os01g03960OsAffx.10899.1.S1_at11/111+1704341..1704741hypothetical protein
LOC_Os01g03970OsAffx.23105.1.S1_at8/111+1707041..1707352hypothetical protein
LOC_Os01g03980Os.3721.1.S1_at11/111+1708939..1709749expressed protein
LOC_Os01g03989NANA1+1715767..1716172hypothetical protein
LOC_Os01g04000NANA1+1728355..1728747hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3721.1.S1_at--389--3931Chr01:1709322..1709346 (25 bp)
CGGCGACCACCGTCGAGTGGGACCT
LOC_Os01g03980
Os.3721.1.S1_at--228--5791Chr01:1709164..1709188 (25 bp)
GACGACGACATTTGGAGGATCCACC
LOC_Os01g03980
Os.3721.1.S1_at--20--8031Chr01:1709151..1709175 (25 bp)
GGAGGATCCACCAAATCTACGAGAT
LOC_Os01g03980
Os.3721.1.S1_at--222--9911Chr01:1709134..1709158 (25 bp)
TACGAGATACCCAATTACGCCGCCA
LOC_Os01g03980
Os.3721.1.S1_at--250--2071Chr01:1709068..1709092 (25 bp)
ACTTGGTAGTAATTGTTGCGTGGTA
LOC_Os01g03980
Os.3721.1.S1_at--57--6691Chr01:1709054..1709078 (25 bp)
GTTGCGTGGTACAGGAATCAATGTC
LOC_Os01g03980
Os.3721.1.S1_at--279--371Chr01:1709038..1709062 (25 bp)
ATCAATGTCGAGTGCGTAGCCAACA
LOC_Os01g03980
Os.3721.1.S1_at--612--6111Chr01:1709029..1709053 (25 bp)
GAGTGCGTAGCCAACAATGTGTTGA
LOC_Os01g03980
Os.3721.1.S1_at--614--2971Chr01:1709014..1709038 (25 bp)
AATGTGTTGACGAGGTTAGCTAGCT
LOC_Os01g03980
Os.3721.1.S1_at--557--711Chr01:1708979..1709003 (25 bp)
ATGATGTGGTGGCATCTCAATTCCC
LOC_Os01g03980
Os.3721.1.S1_at--699--3431Chr01:1708955..1708979 (25 bp)
CAGATTGCAAATTGCTGCAATTCCA
LOC_Os01g03980
Target Sequence 
CGGCGACCACCGTCGAGTGGGACCTCGACGGCGGGCTCAGCAACGGGTTGTCGTGGTGGACGTTCGGGGTGGAGGAGGAG
AAGCTGCTGGGGTGGTTCCCCTTCGTGGAGGAGGACTTCCGCTGCCTCGGCGCCCGCGGCGACGCCGAGATGGCCTTCGA
CGACGACATTTGGAGGATCCACCAAATCTACGAGATACCCAATTACGCCGCCAAGTGATCGATNGGATTCATCTTTGGTT
TTTTCCCNTAGATTACTTGGTAGTAATTGTTGCGTGGTACAGGAATCAATGTCGAGTGCGTAGCCAACAATGTGTTGACG
AGGTTAGCTAGCTGGAGTAGCTGATGATGTGGTGGCATCTCAATTCCCAGATTGCAAATTGCTGCAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis