Browse Element(s) Details


Os.31056.1.S1_at

Description gb:AK107910.1
DB_XREF= gi:32993119
TID=Os.31056.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G05, full insert sequence.
FL= gb:AK107910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g039009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03880Os.47130.4.A1_x_at3/111+1643960..1644217retrotransposon protein, putative, unclassified
LOC_Os01g03890OsAffx.22801.1.S1_at11/111+1654178..1655190seed specific protein Bn15D17A, putative
LOC_Os01g03900Os.31056.1.S1_at9/111+1667277..1667775expressed protein
LOC_Os01g03914Os.11240.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914OsAffx.23104.1.S1_at11/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03914Os.54615.1.S1_at1/111+1669833..1677251Metal tolerance protein C3, putative, expressed
LOC_Os01g03930OsAffx.1923.1.S1_at11/111+1678212..1678615hypothetical protein
LOC_Os01g03940OsAffx.10898.1.S1_x_at7/111+1681543..1682682expressed protein
LOC_Os01g03940OsAffx.10898.1.S1_at5/111+1681543..1682682expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31056.1.S1_at--173--6211Chr01:1667608..1667632 (25 bp)
GAGGCATCAGCCTGGCAGACGCGTT
LOC_Os01g03900
Os.31056.1.S1_at--157--8511Chr01:1667596..1667620 (25 bp)
TGGCAGACGCGTTCCAGGCGCCGAC
LOC_Os01g03900
Os.31056.1.S1_at--922--4091Chr01:1667457..1667481 (25 bp)
CGACAAGCGGCGGATTCCAAGCTGC
LOC_Os01g03900
Os.31056.1.S1_at--513--6351Chr01:1667429..1667453 (25 bp)
GATGCCCTCCACAACAGGTAGAATA
LOC_Os01g03900
Os.31056.1.S1_at--1056--4971NONE
GCATCGATCGATTCAGTTAGCTAGA
NONE
Os.31056.1.S1_at--332--2091Chr01:1667366..1667390 (25 bp)
ACATGAGTACGCTCGATCAGATCGA
LOC_Os01g03900
Os.31056.1.S1_at--598--9651Chr01:1667350..1667374 (25 bp)
TCAGATCGATCGTAGCTAGCAATTT
LOC_Os01g03900
Os.31056.1.S1_at--514--5191Chr01:1667332..1667356 (25 bp)
GCAATTTGTAGTAGCTTGTACGAGC
LOC_Os01g03900
Os.31056.1.S1_at--458--791Chr01:1667302..1667326 (25 bp)
ATGTGTGTGTGTCATACTGCTTGGC
LOC_Os01g03900
Os.31056.1.S1_at--279--331Chr01:1667289..1667313 (25 bp)
ATACTGCTTGGCTGTTCTTCCAAAG
LOC_Os01g03900
Os.31056.1.S1_at--23--8791Chr01:1667277..1667301 (25 bp)
TGTTCTTCCAAAGCCAACTCGATCT
NONE
Target Sequence 
GAGGCATCAGCCTGGCAGACGCGTTCCAGGCGCCGACGCCGGCGAGACTCTCGTCGGGGTCGTCGTACGCCGTCGGCTCG
CGGCCGGTCCCCGCGGCGGCGCCGAGGTGGAGCTCGTCGTCGGCTTCTGAAGCTGCCGCCCGGTTCGCCGACGACAAGCG
GCGGATTCCAAGCTGCCCCGATGCCCTCCACAACAGGTAGAATATAAGATACATACATGCATCGATCGATTCAGTTAGCT
AGACATGAGTACGCTCGATCAGATCGATCGTAGCTAGCAATTTGTAGTAGCTTGTACGAGCAGAGAATGTGTGTGTGTCA
TACTGCTTGGCTGTTCTTCCAAAGCCAACTCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis