Browse Element(s) Details


OsAffx.29867.1.S1_at

Description tigr:9637.m01337
TID=OsAffx.29867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1605011/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16000OsAffx.17726.1.S1_at11/119+9776526..9779697Leucine Rich Repeat family protein
LOC_Os09g16010OsAffx.6291.1.S1_at11/119+9780579..9782841BURP domain containing protein, expressed
LOC_Os09g16020NANA9+9784871..9785143hypothetical protein
LOC_Os09g16030OsAffx.29866.1.S1_at11/119+9789701..9791206Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os09g16040NANA9+9795728..9797952retrotransposon protein, putative, unclassified
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative
LOC_Os09g16060OsAffx.17728.1.S1_at11/119+9806843..9808072hypothetical protein
LOC_Os09g16070OsAffx.17729.1.S1_at11/119+9809123..9809491expressed protein
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29867.1.S1_at--473--2512Chr09:9801913..9801937 (25 bp)
AACATTTGGGCTCATCTACTCGGCG
LOC_Os09g16050
OsAffx.29867.1.S1_at--268--2011Chr09:9801896..9801920 (25 bp)
ACTCGGCGATGCCATTCATGGACAT
LOC_Os09g16050
OsAffx.29867.1.S1_at--551--6211Chr09:9801848..9801872 (25 bp)
GAGGCTCTCTGCAATTGATCGCATG
LOC_Os09g16050
OsAffx.29867.1.S1_at--534--8531Chr09:9801756..9801780 (25 bp)
TGGACTGCTCTCGTTGTGTGCCTGA
LOC_Os09g16050
OsAffx.29867.1.S1_at--602--1971Chr09:9801732..9801756 (25 bp)
ACTGCTTCTGTCGTGATGGGCTTCG
LOC_Os09g16050
OsAffx.29867.1.S1_at--952--10611Chr09:9801711..9801735 (25 bp)
TTCGGGCATGCTAACGTTCTGCAAA
LOC_Os09g16050
OsAffx.29867.1.S1_at--1052--2371Chr09:9801689..9801713 (25 bp)
AAACCCTTGCTCTTGCATGGAAGTT
LOC_Os09g16050
OsAffx.29867.1.S1_at--259--6611Chr09:9801607..9801631 (25 bp)
GTTGGCGTTGGCATATTGGTCATAT
LOC_Os09g16050
OsAffx.29867.1.S1_at--273--3571Chr09:9801577..9801601 (25 bp)
CATTTTTGGTTTGCCGGCGTATCTA
LOC_Os09g16050
OsAffx.29867.1.S1_at--411--2331Chr09:9801502..9801577 (25 bp)
AAAGTCACGCAGCATCGGTTTGAGT
LOC_Os09g16050
OsAffx.29867.1.S1_at--497--6931Chr09:9801410..9801434 (25 bp)
GTAGTACGTTATCATGCCGACCTGA
LOC_Os09g16050
Target Sequence 
AACATTTGGGCTCATCTACTCGGCGATGCCATTCATGGACATGAGCGTCCGTCGCATGTACTTCCGAGGCTCTCTGCAAT
TGATCGCATGCTCGTTGAGAACCTTGGCGGTTTCGTTTGCGTTGGCCGTCTATACGGTGGTTGCTCCGGTCGATCGCTGG
ACTGCTCTCGTTGTGTGCCTGACTGCTTCTGTCGTGATGGGCTTCGGGCATGCTAACGTTCTGCAAACCCTTGCTCTTGC
ATGGAAGTTGCTCGCAAGAATGGGGTATCGGTTGTCGGCGATGTTACTGGCAAGGATAATTATGCAGTTGGCGTTGGCAT
ATTGGTCATATATACCCATTTTTGGTTTGCCGGCGTATCTAAAGTCACGCAGCATCGGTTTGAGTTGTGTGCTAATGGAT
GATTATCAAGGAAGGGTGCTTGGCATGAAGGTGATATATATATGTATGATACGTAGTACGTTATCATGCCGACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis