Browse Element(s) Details


OsAffx.6292.1.S1_at

Description tigr:9637.m01341
TID=OsAffx.6292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1609011/11Cytokinin-O-glucosyltransferase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative
LOC_Os09g16060OsAffx.17728.1.S1_at11/119+9806843..9808072hypothetical protein
LOC_Os09g16070OsAffx.17729.1.S1_at11/119+9809123..9809491expressed protein
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein
LOC_Os09g16120OsAffx.17730.1.S1_at10/119+9833418..9834694hypothetical protein
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6292.1.S1_at--287--8231Chr09:9825194..9825218 (25 bp)
GGCAATCCCGGAGGTGCAACTCAAG
LOC_Os09g16090
OsAffx.6292.1.S1_at--1014--8971Chr09:9825138..9825162 (25 bp)
TGAACTTCATATGGGCTGTTAGGCC
LOC_Os09g16090
OsAffx.6292.1.S1_at--1148--2471Chr09:9825109..9825133 (25 bp)
AACATTGACCTTGGGCTAGGGTTCG
LOC_Os09g16090
OsAffx.6292.1.S1_at--220--7691Chr09:9825004..9825028 (25 bp)
GGGTTTCTCAGTCATTCTGGATGGA
LOC_Os09g16090
OsAffx.6292.1.S1_at--1139--6011Chr09:9824968..9824992 (25 bp)
GAGAGTGTCACAACTGGTGTACCAC
LOC_Os09g16090
OsAffx.6292.1.S1_at--605--7751Chr09:9824953..9824977 (25 bp)
GGTGTACCACTAGCTGTTTGGCCTA
LOC_Os09g16090
OsAffx.6292.1.S1_at--23--6871Chr09:9824938..9824962 (25 bp)
GTTTGGCCTATGATCGCCGATCAAC
LOC_Os09g16090
OsAffx.6292.1.S1_at--786--6451Chr09:9824920..9824944 (25 bp)
GATCAACCCTTCAACGCGAGATTCT
LOC_Os09g16090
OsAffx.6292.1.S1_at--714--4611Chr09:9824905..9824929 (25 bp)
GCGAGATTCTTAGTCGACGAGCTGA
LOC_Os09g16090
OsAffx.6292.1.S1_at--853--2491Chr09:9824881..9824905 (25 bp)
AACATTGCGATTAGGGTTTCACCGA
LOC_Os09g16090
OsAffx.6292.1.S1_at--279--6831Chr09:9824866..9824890 (25 bp)
GTTTCACCGATTGATAGGACCATGC
LOC_Os09g16090
Target Sequence 
GGCAATCCCGGAGGTGCAACTCAAGGAAGTTGCCGATGGGTTGGAGCGGGCTGATGTGAACTTCATATGGGCTGTTAGGC
CCAAAAACATTGACCTTGGGCTAGGGTTCGAGGAGCGTATCAAGGATAGAGGCCTAGTTGTAAGGGAGTGGGTGGATCAA
CTGGAAATTTTACAGCATGAGAGCGTACGAGGGTTTCTCAGTCATTCTGGATGGAACTCTGTGCTAGAGAGTGTCACAAC
TGGTGTACCACTAGCTGTTTGGCCTATGATCGCCGATCAACCCTTCAACGCGAGATTCTTAGTCGACGAGCTGAACATTG
CGATTAGGGTTTCACCGATTGATAGGACCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis