Browse Element(s) Details


OsAffx.29868.2.S1_at

Description tigr:9637.m01347
TID=OsAffx.29868.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1615011/11hypothetical protein
LOC_Os04g237391/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g248601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein
LOC_Os09g16120OsAffx.17730.1.S1_at10/119+9833418..9834694hypothetical protein
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29868.2.S1_at--754--6011Chr09:9848641..9848665 (25 bp)
GAGAGACGGTTAGAGATGCTCTGAA
LOC_Os09g16150
OsAffx.29868.2.S1_at--1001--1411Chr09:9848667..9848691 (25 bp)
AGAAATGGGACGCTCTTTCTCTCCC
LOC_Os09g16150
OsAffx.29868.2.S1_at--564--9991Chr09:9848693..9848717 (25 bp)
TAGCCAGGCTAGCATGTGCAGGTCC
LOC_Os09g16150
OsAffx.29868.2.S1_at--71--791Chr09:9848706..9848730 (25 bp)
ATGTGCAGGTCCCACTATCTTATAG
LOC_Os09g16150
OsAffx.29868.2.S1_at--979--7231Chr09:9848714..9848738 (25 bp)
GTCCCACTATCTTATAGCGTGCACA
LOC_Os09g16150
OsAffx.29868.2.S1_at--721--1631Chr09:9848729..9848753 (25 bp)
AGCGTGCACAGATTTGCATGTCCTA
LOC_Os09g16150
OsAffx.29868.2.S1_at--136--211Chr09:9848740..9848764 (25 bp)
ATTTGCATGTCCTAGTGGACCGGCC
LOC_Os09g16150
OsAffx.29868.2.S1_at--485--9431Chr09:9848896..9848920 (25 bp)
TCGGGCTCGCTGTGTCTCAGGGCAA
LOC_Os09g16150
OsAffx.29868.2.S1_at--393--1492Chr09:9848984..9849008 (25 bp)
AGCAAAGTGGCTGTGGTCGCACGCT
LOC_Os09g16150
OsAffx.29868.2.S1_at--102--8674Chr09:9848995..9849019 (25 bp)
TGTGGTCGCACGCTTCATATTGGCA
LOC_Os09g16150
OsAffx.29868.2.S1_at--1035--8192Chr09:9849045..9849069 (25 bp)
GGAATTCTAGCGAAACCGCTTTTTG
LOC_Os09g16150
Target Sequence 
GAGAGACGGTTAGAGATGCTCTGAAGAGAAATGGGACGCTCTTTCTCTCCCCTAGCCAGGCTAGCATGTGCAGGTCCCAC
TATCTTATAGCGTGCACAGATTTGCATGTCCTAGTGGACCGGCCGGACGCGACGGTGCCGATGGATGTGTGGTGGCTAGT
GCCGCAGCACGTGCTCGTCGGCGTCGCCGAGGTGCTCGCCGTGATTGAGCTGGAGGAGTTCTTCTACGACCAGTTGGCCG
GCGAGCTTCACATCGTCGGGCTCGCTGTGTCTCAGGGCAATTTCGTCTCATCAAGCCACATTCCAGCGAAAATAAAATCA
AAAATGGAGAAAATGGAGAAAATAGCAAAGTGGCTGTGGTCGCACGCTTCATATTGGCATTTTAACGAAAGACGTTTTCA
AAATGGAATTCTAGCGAAACCGCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29868.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis