Browse Element(s) Details


OsAffx.17733.1.S1_at

Description tigr:9637.m01348
TID=OsAffx.17733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1616011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein
LOC_Os09g16120OsAffx.17730.1.S1_at10/119+9833418..9834694hypothetical protein
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17733.1.S1_at--552--3251Chr09:9859209..9859233 (25 bp)
CAACGAGTCCCAGATACTGAGTGAC
LOC_Os09g16160
OsAffx.17733.1.S1_at--1094--11Chr09:9859252..9859276 (25 bp)
ATTGGCTCCGTCCTGATAGCAACGG
LOC_Os09g16160
OsAffx.17733.1.S1_at--1116--2511Chr09:9859290..9859314 (25 bp)
AACTTTCGCTCTACCAGGAGGCTAT
LOC_Os09g16160
OsAffx.17733.1.S1_at--981--911Chr09:9859308..9859332 (25 bp)
AGGCTATAGAGCTGATGACCACATC
LOC_Os09g16160
OsAffx.17733.1.S1_at--1154--5431Chr09:9859347..9859371 (25 bp)
GACACTCGCGGGAAGGTACACGTTC
LOC_Os09g16160
OsAffx.17733.1.S1_at--1044--2891Chr09:9859359..9859383 (25 bp)
AAGGTACACGTTCGACGCATTCATC
LOC_Os09g16160
OsAffx.17733.1.S1_at--973--10451Chr09:9859396..9859420 (25 bp)
TTAGCATTCATCTGCTCCTCGATTG
LOC_Os09g16160
OsAffx.17733.1.S1_at--230--91Chr09:9859417..9859441 (25 bp)
ATTGCCACCCTTGATCTTATGTACT
LOC_Os09g16160
OsAffx.17733.1.S1_at--632--8751Chr09:9859436..9859460 (25 bp)
TGTACTCCGGGATCTCCATGGTCAA
LOC_Os09g16160
OsAffx.17733.1.S1_at--465--8091Chr09:9859517..9859541 (25 bp)
GGACCAGCTTGGTGGCTGCATTTGC
LOC_Os09g16160
OsAffx.17733.1.S1_at--77--5631Chr09:9859710..9859734 (25 bp)
GACAAAAGATATTCTCTCTGGCGTG
LOC_Os09g16160
Target Sequence 
CAACGAGTCCCAGATACTGAGTGACTCAACCCAAACCCTAGCCATTGGCTCCGTCCTGATAGCAACGGTGACATTCGGCG
CAACTTTCGCTCTACCAGGAGGCTATAGAGCTGATGACCACATCAATGGCGGCTCACCGACACTCGCGGGAAGGTACACG
TTCGACGCATTCATCATGGCAACAACCTTAGCATTCATCTGCTCCTCGATTGCCACCCTTGATCTTATGTACTCCGGGAT
CTCCATGGTCAACCTGCCTGTCCGCCGCAACCACTTCGCCGTGTCCATCTTCTTCCTGACGAGCTCCGGGACCAGCTTGG
TGGCTGCATTTGCACTGGGGGTGTACATGGTGCTGGCTCCGGTTGATGCCAAGACTGGCATTGCCATCTGCGTGCTCAGC
CCCTTCACTATGCTGTACAGAAACAAGGGACGCCTTCAGAAGCTCTATGCACTCGCTGGACCGTTGTATATCAGAATGGG
GCTTTGGGCGTTGCTGTCACTGACAAAAGATATTCTCTCTGGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis