Browse Element(s) Details


OsAffx.17730.1.S1_at

Description tigr:9637.m01344
TID=OsAffx.17730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1612010/11hypothetical protein
LOC_Os12g241601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16070OsAffx.17729.1.S1_at11/119+9809123..9809491expressed protein
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein
LOC_Os09g16120OsAffx.17730.1.S1_at10/119+9833418..9834694hypothetical protein
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17730.1.S1_at--617--6751Chr09:9833453..9833477 (25 bp)
GTTCACAATGAAGTCCAAAACCGGC
LOC_Os09g16120
OsAffx.17730.1.S1_at--1043--8991Chr09:9833461..9833485 (25 bp)
TGAAGTCCAAAACCGGCCTCATCAA
LOC_Os09g16120
OsAffx.17730.1.S1_at--1078--3911Chr09:9833474..9833498 (25 bp)
CGGCCTCATCAACTTGCGGCTGGTG
LOC_Os09g16120
OsAffx.17730.1.S1_at--813--7771Chr09:9833495..9833519 (25 bp)
GGTGCTCGCCTCAGTCCAGAAGGGA
LOC_Os09g16120
OsAffx.17730.1.S1_at--386--9331Chr09:9833500..9833524 (25 bp)
TCGCCTCAGTCCAGAAGGGAGCAAT
LOC_Os09g16120
OsAffx.17730.1.S1_at--56--1471Chr09:9833512..9833536 (25 bp)
AGAAGGGAGCAATGTCGGTCACCGA
LOC_Os09g16120
OsAffx.17730.1.S1_at--178--7171NONE
GTCGGTCACCGAGAATTGTCAAAAG
NONE
OsAffx.17730.1.S1_at--160--2331Chr09:9834239..9834263 (25 bp)
AAAGTTTGCACTAAAGGATCTGGGA
LOC_Os09g16120
OsAffx.17730.1.S1_at--563--5092Chr09:9834246..9834270 (25 bp)
GCACTAAAGGATCTGGGAGACCTCC
LOC_Os09g16120
OsAffx.17730.1.S1_at--548--3811Chr09:9834267..9834291 (25 bp)
CTCCACTTCTTCCTTGGCATTGAAG
LOC_Os09g16120
OsAffx.17730.1.S1_at--917--7031Chr09:9834291..9834653 (25 bp)
GTAAACAAGACTGGGCATGTTGCTT
LOC_Os09g16120
Target Sequence 
GTTCACAATGAAGTCCAAAACCGGCCTCATCAACTTGCGGCTGGTGCTCGCCTCAGTCCAGAAGGGAGCAATGTCGGTCA
CCGAGAATTGTCAAAAGTTTGCACTAAAGGATCTGGGAGACCTCCACTTCTTCCTTGGCATTGAAGTAAACAAGACTGGG
CATGTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis