Browse Element(s) Details


OsAffx.6294.1.S1_at

Description tigr:9637.m01353
TID=OsAffx.6294.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1620010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6294.1.S1_at--62--3331Chr09:9885681..9885705 (25 bp)
CACCGACGGTGACCAGGCGTTGGAG
LOC_Os09g16200
OsAffx.6294.1.S1_at--131--8352Chr09:9885715..9885739 (25 bp)
GGCGGGCGGCGGCAAGACAAACAAG
LOC_Os09g16200
OsAffx.6294.1.S1_at--975--4751Chr09:9885831..9885855 (25 bp)
GCTGCTTCTGAGAGACAATGGCGGC
LOC_Os09g16200
OsAffx.6294.1.S1_at--419--3651Chr09:9885835..9885859 (25 bp)
CTTCTGAGAGACAATGGCGGCATGA
LOC_Os09g16200
OsAffx.6294.1.S1_at--205--2811Chr09:9886039..9886063 (25 bp)
AAGATCGTCGATCTCTGCCGGAGTT
LOC_Os09g16200
OsAffx.6294.1.S1_at--156--5091NONE
GCACGACGGTTTTGTGTGGTTCTCT
NONE
OsAffx.6294.1.S1_at--1018--7891Chr09:9887072..9887096 (25 bp)
GGTTCTCTCTCTTTTGCGATTTGTA
LOC_Os09g16200
OsAffx.6294.1.S1_at--635--4631Chr09:9887087..9887111 (25 bp)
GCGATTTGTACTTGTCGCCAGAAAT
LOC_Os09g16200
OsAffx.6294.1.S1_at--345--7011Chr09:9887094..9887118 (25 bp)
GTACTTGTCGCCAGAAATTGTTTTG
LOC_Os09g16200
OsAffx.6294.1.S1_at--998--5591Chr09:9887107..9887131 (25 bp)
GAAATTGTTTTGATCTTGGACCTTC
LOC_Os09g16200
OsAffx.6294.1.S1_at--16--10411Chr09:9887114..9887138 (25 bp)
TTTTGATCTTGGACCTTCAAGGATC
LOC_Os09g16200
Target Sequence 
CACCGACGGTGACCAGGCGTTGGAGCAGGAGGACGGCGGGCGGCGGCAAGACAAACAAGCAGCAGCAGATCGCCAGGAGC
GGAGGCGGCGGCGGCCGTGGTGGTACATGGTCCAGATCAATGTCAAACGATGGCTACACAGGAGGACCATGCTGCTTCTG
AGAGACAATGGCGGCATGAATTCACTGTGCGAGGATAGGTACATCAAGCTCACATGCCTGGGCACTCATCGCATCCTCAT
CCATTACGCCAGGCAGATGCAGTGCTTGTACTACAACGTCCTCATGAACGAGGTTGGGATGGATAGCTGGGAGGAGTACA
CCGAGCAGGACAGGGAGGATGTCCGGGCGCTGATAGACAAGATCGTCGATCTCTGCCGGAGTTCGATTCCCAGGCCGCCG
CACGACGGTTTTGTGTGGTTCTCTCTCTTTTGCGATTTGTACTTGTCGCCAGAAATTGTTTTGATCTTGGACCTTCAAGG
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis