Browse Element(s) Details


OsAffx.6295.1.S1_at

Description tigr:9637.m01357
TID=OsAffx.6295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1624011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6295.1.S1_at--255--2751Chr09:9910293..9910317 (25 bp)
AAGAAGCTGACGGAATCCACCCAAA
LOC_Os09g16240
OsAffx.6295.1.S1_at--713--9951Chr09:9910164..9910188 (25 bp)
TACGCCTTCGACGTGTTCATCATCG
LOC_Os09g16240
OsAffx.6295.1.S1_at--350--10531Chr09:9910149..9910173 (25 bp)
TTCATCATCGCCAACACGCTGGCGT
LOC_Os09g16240
OsAffx.6295.1.S1_at--960--2471Chr09:9910137..9910161 (25 bp)
AACACGCTGGCGTTCATCTGCGCGG
LOC_Os09g16240
OsAffx.6295.1.S1_at--585--8331Chr09:9910112..9910136 (25 bp)
GGCTGTCCGTCATCAGCCTCACGTA
LOC_Os09g16240
OsAffx.6295.1.S1_at--266--7231Chr09:9910071..9910095 (25 bp)
GTCGACATGCGCACCCGCATGATCT
LOC_Os09g16240
OsAffx.6295.1.S1_at--1143--10571Chr09:9910038..9910062 (25 bp)
TTCTCGGCGTCGTTCATGGCGTGCT
LOC_Os09g16240
OsAffx.6295.1.S1_at--860--10631Chr09:9909990..9910014 (25 bp)
TTCGCGTTCGGGATGTACGTCGTGC
LOC_Os09g16240
OsAffx.6295.1.S1_at--613--9091Chr09:9909857..9909881 (25 bp)
TGCTCAAGAGGCTCGGGATTGCACG
LOC_Os09g16240
OsAffx.6295.1.S1_at--1044--4731Chr09:9909793..9909817 (25 bp)
GCTGATGCAATTCTGGCCTTACATT
LOC_Os09g16240
OsAffx.6295.1.S1_at--753--8431Chr09:9909779..9909803 (25 bp)
GGCCTTACATTGTGATTGTTGTCGT
LOC_Os09g16240
Target Sequence 
AAGAAGCTGACGGAATCCACCCAAACCATCGGCGTCGGCTCGGTGCTGATCGCCACGGTGGCGTTCGCGGCGGCGTTCGC
GCCGCCGGGCGACTACGGCGACGATGGCGCGCCGAGGCTGGCCGGCCGCTACGCCTTCGACGTGTTCATCATCGCCAACA
CGCTGGCGTTCATCTGCGCGGGGCTGTCCGTCATCAGCCTCACGTACGCCGGGGTGGCCGCCGTCGACATGCGCACCCGC
ATGATCTCCTTCGTCTTCTCGGCGTCGTTCATGGCGTGCTCGGCGAGGAGCCTCGGCGTGGCGTTCGCGTTCGGGATGTA
CGTCGTGCTGGCCCCCGTGGCACGCACGACGGCCATCGCCGCCTGCGTCATCACGGGGCTCGCGCTGGCCGACGTCGCGT
GGTTCGTCTTTGTGGTGGCCGCCGGCGAGGTGATGCTGCTCAAGAGGCTCGGGATTGCACGGGCGTGGTGGCGGCTGCCG
TTCGCCATCATGGCCACCTTGCTGATGCAATTCTGGCCTTACATTGTGATTGTTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis