Browse Element(s) Details


OsAffx.17736.1.S1_at

Description tigr:9637.m01355
TID=OsAffx.17736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1622011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17736.1.S1_at--793--8691Chr09:9901462..9901486 (25 bp)
TGTGCTGACACCGAGGACTATTTGA
LOC_Os09g16220
OsAffx.17736.1.S1_at--1088--5571Chr09:9901381..9901405 (25 bp)
GAAATGGACACTCCTCTGCACTGTG
LOC_Os09g16220
OsAffx.17736.1.S1_at--734--2071Chr09:9901094..9901118 (25 bp)
ACATTGGTATGGTTTCTTGCCTCAT
LOC_Os09g16220
OsAffx.17736.1.S1_at--10--6371Chr09:9900918..9900942 (25 bp)
GATCCAGAACTAGTATGCGTCCCAA
LOC_Os09g16220
OsAffx.17736.1.S1_at--1079--8631Chr09:9900850..9900874 (25 bp)
TGGGACCTTGTGTTCGAATCGGAGT
LOC_Os09g16220
OsAffx.17736.1.S1_at--732--1451Chr09:9900807..9900831 (25 bp)
AGAAGTTCTCTTATTTCGGCCCGTG
LOC_Os09g16220
OsAffx.17736.1.S1_at--368--10611Chr09:9900793..9900817 (25 bp)
TTCGGCCCGTGTGGACAAAATGTCT
LOC_Os09g16220
OsAffx.17736.1.S1_at--213--771Chr09:9900774..9900798 (25 bp)
ATGTCTTCCATATAGCAGCTTTGTG
LOC_Os09g16220
OsAffx.17736.1.S1_at--752--5551Chr09:9899914..9899933 (20 bp)
GAAAGAGCCAAATCTAGTCCGCACG
LOC_Os09g16220
OsAffx.17736.1.S1_at--376--1151Chr09:9899899..9899923 (25 bp)
AGTCCGCACGCGATGAAGGCTGTCA
LOC_Os09g16220
OsAffx.17736.1.S1_at--362--10771Chr09:9899865..9899889 (25 bp)
TTGAGAAGTATCCTAGCTGCGCCAC
LOC_Os09g16220
Target Sequence 
TGTGCTGACACCGAGGACTATTTGAAGTGTGCAAGAATGATATACAACAAGGCGAGTCGCCTATTGGATGCGATCAACAG
CGAAATGGACACTCCTCTGCACTGTGCGGGCTGGGAACATTGGTATGGTTTCTTGCCTCATCGAGTTGGCGGCAGGCGAG
CAGAATTATCATCACGGTGCAGGGTGGAAGAAGCTGATGTCGGAGGATCCAGAACTAGTATGCGTCCCAAGGATGGCACA
TCACCACTAGACCTTGCCATTGCATTAAGGCGTTGGGACCTTGTGTTCGAATCGGAGTTGCTTGTTGCAAGTTTTAAGAA
GTTCTCTTATTTCGGCCCGTGTGGACAAAATGTCTTCCATATAGCAGCTTTGTGGGAAAGAGCCAAATCTAGTCCGCACG
CGATGAAGGCTGTCATCGTAATGCTTGAGAAGTATCCTAGCTGCGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis