Browse Element(s) Details


OsAffx.18675.1.A1_at

Description gb:NM_193942.1
DB_XREF= gi:34914967
GEN=OSJNBa0091E23.26
TID=OsAffx.18675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0091E23.26 (OSJNBa0091E23.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g162401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18675.1.A1_at--46--5771NONE
GACGTGTTTGATTTGCGGCTCGCCG
NONE
OsAffx.18675.1.A1_at--800--2551Chr01:16406894..16406918 (25 bp)
AACTGCTTGTCCTGCTCCTGCAAGG
NONE
OsAffx.18675.1.A1_at--47--10651Chr01:16406954..16406978 (25 bp)
TTCGCGGCTATCTGCAGTGGCACGA
NONE
OsAffx.18675.1.A1_at--771--6294Chr10:11894317..11894337 (21 bp)
GATGATCAACGGCTCAGATTACTTT
NONE
OsAffx.18675.1.A1_at--878--48112Chr12:2317301..2317325 (25 bp)
GCTCAGATTACTTTCTACTCCGAGT
NONE
OsAffx.18675.1.A1_at--455--10551Chr01:16407274..16407298 (25 bp)
TTCTACTCCGAGTACAAAGCACCGG
NONE
OsAffx.18675.1.A1_at--431--5071Chr01:16407292..16407316 (25 bp)
GCACCGGAGTAGGACTAGCGTTTTT
NONE
OsAffx.18675.1.A1_at--180--5636Chr02:20502519..20502543 (25 bp)
GACAAATTGGTCCTTGCAGAAAACT
NONE
OsAffx.18675.1.A1_at--361--10095Chr02:17085216..17085240 (25 bp)
TAGGCCGTCGGATCAGCGCCAAAGC
NONE
OsAffx.18675.1.A1_at--496--8476Chr02:20502612..20502636 (25 bp)
TGGCGCTGAGGTTGTTCTTATCTGC
NONE
OsAffx.18675.1.A1_at--730--10797Chr02:20502623..20502647 (25 bp)
TTGTTCTTATCTGCGCCAACGGGAC
NONE
Target Sequence 
GACGTGTTTGATTTGCGGCTCGCCGGCGCTGCACATCCTGGCGAGCTGGTCCGCCTCCGTGGGGGCAAGGTGGACCACCA
ACTGCTTGTCCTGCTCCTGCAAGGGCGCCATGATGGCGCCCATGTACGCCACCGAGCCGTTCGCGGCTATCTGCAGTGGC
ACGACGGGTGGCGGGATGAGGTCGCCGCAGCCCATGCGCGGTGCATGCTCGGCGAGGGAGATAGGACGGCGACGGAGGCG
GGGATGGAGGGGAATAGCGTCGTGGGAGTAGAACTAAATCTCAACCCTACAATTAAAGATGATCAACGGCTCAGATTACT
TTCTACTCCGAGTACAAAGCACCGGAGTAGGACTAGCGTTTTTTTGACAAATTGGTCCTTGCAGAAAACTTATTTCGAAA
CTAGTCCCTACCAAAAACTATATCCAGAAATAGGCCGTCGGATCAGCGCCAAAGCGGTTGGCGCTGAGGTTGTTCTTATC
TGCGCCAACGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18675.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis