Browse Element(s) Details


Os.52894.1.S1_at

Description gb:AK069759.1
DB_XREF= gi:32979783
TID=Os.52894.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030G18, full insert sequence.
FL= gb:AK069759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1628011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein
LOC_Os09g16300NANA9+9957668..9958374hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52894.1.S1_at--472--771Chr09:9932564..9932588 (25 bp)
ATGTCGATCAGTCCACGCTTCTTGG
LOC_Os09g16280
Os.52894.1.S1_at--278--7731Chr09:9932693..9932717 (25 bp)
GGTGGCGCGGTGAACAGCTACCCTC
LOC_Os09g16280
Os.52894.1.S1_at--535--6371Chr09:9932893..9932917 (25 bp)
GATCCTGCCGTGGTTCCCGTGGTAC
LOC_Os09g16280
Os.52894.1.S1_at--181--7891Chr09:9932904..9932928 (25 bp)
GGTTCCCGTGGTACTACCAGCACAA
LOC_Os09g16280
Os.52894.1.S1_at--466--8811Chr09:9933003..9933027 (25 bp)
TGTTGCTCCCGCTGTTCTTGGTTGC
LOC_Os09g16280
Os.52894.1.S1_at--373--9571Chr09:9933028..9933052 (25 bp)
TCTTCTTCGTGTGCTGTAGAGTGCT
LOC_Os09g16280
Os.52894.1.S1_at--1063--9411Chr09:9933034..9933058 (25 bp)
TCGTGTGCTGTAGAGTGCTTAATAA
LOC_Os09g16280
Os.52894.1.S1_at--1088--331Chr09:9933055..9933079 (25 bp)
ATAAATTCTAATTTGTCGCTAGGAG
LOC_Os09g16280
Os.52894.1.S1_at--826--211Chr09:9933065..9933089 (25 bp)
ATTTGTCGCTAGGAGTGTTTTGCTA
LOC_Os09g16280
Os.52894.1.S1_at--219--1291Chr09:9933101..9933125 (25 bp)
AGATGTTTTATGTACAACCTGGTTT
LOC_Os09g16280
Os.52894.1.S1_at--300--3251Chr09:9933115..9933139 (25 bp)
CAACCTGGTTTTTGTTAACTGAGAT
LOC_Os09g16280
Target Sequence 
ATGTCGATCAGTCCACGCTTCTTGGCCGTCGCCGCCGTCCTCGCCGGCGCGATGTACTCCGCCGCGACGGTGGCCGCGGA
CACGCCGGGCGGCAGCTGCCCGTACCCGTGCCTCCCGCCGCCGATCGCCGGTGGCGCGGTGAACAGCTACCCTCCGCCGC
CGCCCGCGGGGAGTAGTAGCAGCAGCAGCTCAGGTGGAGGCGATGGCGGCGCCGGCGGGTTGTTTGGCGGGACCTACCCG
CCGCCGCCGCCCGGGGTGATGCCTGGGGCCTTCGCTCCGCCGTTCGGCGGCGGGTTCCCGTACGGGCCAGCGCCGCCGCC
GCCCAACCCGATCCTGCCGTGGTTCCCGTGGTACTACCAGCACAACAACCCCATCACCGGGTCGACGACGTCGGCGGCGG
CGGTGGGCCGGACGCCGGCGAGCATGGTCACGACGGTGGTGTTGCTCCCGCTGTTCTTGGTTGCTCTTCTTCGTGTGCTG
TAGAGTGCTTAATAAATTCTAATTTGTCGCTAGGAGTGTTTTGCTAGGTAATTAGTAAGATGTTTTATGTACAACCTGGT
TTTTGTTAACTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis