Browse Element(s) Details


OsAffx.17735.1.S1_at

Description tigr:9637.m01354
TID=OsAffx.17735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1621011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16190OsAffx.17734.1.S1_at9/119+9874701..9875672hypothetical protein
LOC_Os09g16200OsAffx.6294.1.S1_at10/119+9880133..9887172hypothetical protein
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17735.1.S1_at--210--5391Chr09:9896821..9896845 (25 bp)
GAAGCATTGCTAATTGCCGACGCTC
LOC_Os09g16210
OsAffx.17735.1.S1_at--986--4491Chr09:9896806..9896830 (25 bp)
GCCGACGCTCCTAGTAATACTGGTG
LOC_Os09g16210
OsAffx.17735.1.S1_at--885--3091Chr09:9896791..9896815 (25 bp)
AATACTGGTGACGACGTTCCGCTAG
LOC_Os09g16210
OsAffx.17735.1.S1_at--373--3611Chr09:9896645..9896669 (25 bp)
CATTGGGATTGTCTCTGTGCTCGTC
LOC_Os09g16210
OsAffx.17735.1.S1_at--515--3911Chr09:9896290..9896310 (21 bp)
CTGGAGGCCTGCTTTACGGGAATGT
LOC_Os09g16210
OsAffx.17735.1.S1_at--612--6051Chr09:9896264..9896288 (25 bp)
GAGTTACGGCAGTCCATCATGGTGG
LOC_Os09g16210
OsAffx.17735.1.S1_at--968--2891Chr09:9896210..9896234 (25 bp)
AAGGTAGCTCTTCAGTTCAACTCCA
LOC_Os09g16210
OsAffx.17735.1.S1_at--780--2371Chr09:9896185..9896209 (25 bp)
AAACTCTAACTCTGTTCTACCCAAT
LOC_Os09g16210
OsAffx.17735.1.S1_at--1032--1811Chr09:9896167..9896191 (25 bp)
ACCCAATCTTTGTATCTCTGTTCTA
LOC_Os09g16210
OsAffx.17735.1.S1_at--603--6731Chr09:9896148..9896172 (25 bp)
GTTCTACAATTTCTGGTCCTTCGTA
LOC_Os09g16210
OsAffx.17735.1.S1_at--871--7251Chr09:9896133..9896157 (25 bp)
GTCCTTCGTATTAATCTTCGGCCTG
LOC_Os09g16210
Target Sequence 
GAAGCATTGCTAATTGCCGACGCTCCTAGTAATACTGGTGACGACGTTCCGCTAGACGGAAGAGACGGCCGTGATGGCCC
AGACCGCTCCGACAGAATCGATAAACGGAAAATCCATGAGCTCAGAACTAGCGAGGAAGACAAGGTTTCGCAGAATATAA
CAACTGGAACGCAGGTCATTGGGATTGTCTCTGTGCTCGTCGCGGCTGTGCCATTTGCAGCAGCCTTCGCGCTGCCTGGA
GGCCTGCTTTACGGGAATGTGGAGTTACGGCAGTCCATCATGGTGGCAAAAACGGTATGCATCAGAATCGGACTTAAGGT
AGCTCTTCAGTTCAACTCCAAAACTCTAACTCTGTTCTACCCAATCTTTGTATCTCTGTTCTACAATTTCTGGTCCTTCG
TATTAATCTTCGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis