Browse Element(s) Details


OsAffx.17724.1.S1_at

Description tigr:9637.m01327
TID=OsAffx.17724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1595011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15910NANA9+9717101..9717337hypothetical protein
LOC_Os09g15920Os.24831.1.S1_x_at9/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.24831.3.S1_x_at6/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.53142.1.S1_at3/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.24831.4.S1_x_at1/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15930NANA9+9724415..9724741hypothetical protein
LOC_Os09g15940OsAffx.21921.1.S1_at1/119+9739076..9741224retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15950OsAffx.17724.1.S1_at11/119+9741900..9745357hypothetical protein
LOC_Os09g15960OsAffx.22759.1.S1_at5/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15960OsAffx.22759.2.S1_at1/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15970OsAffx.22240.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.10020.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.8338.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15980Os.26963.1.A1_at11/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.11244.1.S1_at1/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.19810.4.S1_s_at1/119+9767948..9774758expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17724.1.S1_at--604--8631Chr09:9742384..9742408 (25 bp)
TGGGTGCCCTCTACGGTTTCAAGGT
LOC_Os09g15950
OsAffx.17724.1.S1_at--816--2091Chr09:9742345..9742369 (25 bp)
ACATCTTGGCTTTCTTCTGTTCCGT
LOC_Os09g15950
OsAffx.17724.1.S1_at--580--8071Chr09:9742213..9742237 (25 bp)
GGAGCATCATAGTAGCCTTCGCGTT
LOC_Os09g15950
OsAffx.17724.1.S1_at--432--8171Chr09:9742168..9742192 (25 bp)
GGAACATTTCTCTCAGTGCCATCAG
LOC_Os09g15950
OsAffx.17724.1.S1_at--1077--10131Chr09:9742125..9742149 (25 bp)
TATCGCTGTCGTGTTCTACGGGAAC
LOC_Os09g15950
OsAffx.17724.1.S1_at--1118--9911Chr09:9742109..9742133 (25 bp)
TACGGGAACGTTCCTCTTGGTCAAG
LOC_Os09g15950
OsAffx.17724.1.S1_at--498--6331Chr09:9742065..9742089 (25 bp)
GATGCACCGCAGGTTTGGCTTCTCA
LOC_Os09g15950
OsAffx.17724.1.S1_at--1044--6711Chr09:9742039..9742063 (25 bp)
GTTCTTGGAACCTGTATCCTTCTAC
LOC_Os09g15950
OsAffx.17724.1.S1_at--868--9711Chr09:9742003..9742027 (25 bp)
TCAACTGGACATCCTGGCAGCTCAA
LOC_Os09g15950
OsAffx.17724.1.S1_at--897--4211Chr09:9741970..9741994 (25 bp)
CCGCGACGCTGGTTTGGAATCTGAT
LOC_Os09g15950
OsAffx.17724.1.S1_at--595--8111Chr09:9741934..9741958 (25 bp)
GGACTTATGTCCTCATATTTGCACT
LOC_Os09g15950
Target Sequence 
TGGGTGCCCTCTACGGTTTCAAGGTTTTCCTCGTCGCCGACATCTTGGCTTTCTTCTGTTCCGTTGCGGCCACCTTCAGC
CTTGCCGAGTACGGGAACCGCGGGACGGTGGATCCCCTTGTCCGCTGTCGGTACTCACAGCGTGCCGTGTGGCTCTTCCA
TGTCGCCCTCAGGAGCATCATAGTAGCCTTCGCGTTCGGGGTCTCGGTGGTGATGTGGAACATTTCTCTCAGTGCCATCA
GCATCGGTGGTGTAGCCACTATCGCTGTCGTGTTCTACGGGAACGTTCCTCTTGGTCAAGATTTCAGGCTTATGTTGCTG
ATGCACCGCAGGTTTGGCTTCTCACGTTCTTGGAACCTGTATCCTTCTACGGCCTCTCATCTCAACTGGACATCCTGGCA
GCTCAAAAGCTTTTCCGCGACGCTGGTTTGGAATCTGATGAATCTTTTTTGGACTTATGTCCTCATATTTGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis