Browse Element(s) Details


OsAffx.26607.2.S1_at

Description tigr:9631.m02010
TID=OsAffx.26607.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2028010/11hypothetical protein
LOC_Os05g227501/11retrotransposon protein, putative, unclassified
LOC_Os07g202801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20250OsAffx.25161.1.S1_at11/113+11421926..11422204hypothetical protein
LOC_Os03g20260NANA3+11428263..11429438Eukaryotic aspartyl protease family protein
LOC_Os03g20270Os.54672.1.S1_at1/113+11438721..11439880Eukaryotic aspartyl protease family protein
LOC_Os03g20280OsAffx.26607.2.S1_at10/113+11440549..11442303hypothetical protein
LOC_Os03g20280OsAffx.22759.2.S1_at1/113+11440549..11442303hypothetical protein
LOC_Os03g20290Os.54672.1.S1_at10/113+11446469..11447983Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20300Os.16992.1.S1_at10/113+11447889..11454565Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
LOC_Os03g20310Os.15238.1.S1_at11/113+11454734..11460085Transcription factor HBP-1b, putative, expressed
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26607.2.S1_at--1039--8271Chr03:11440819..11440843 (25 bp)
GGCTTGGGTGCATCGCGGTGCCGCA
LOC_Os03g20280
OsAffx.26607.2.S1_at--902--8631Chr03:11440849..11440873 (25 bp)
TGGGAGGCCGCCTTAGCGTGCGCGA
LOC_Os03g20280
OsAffx.26607.2.S1_at--54--3811Chr03:11440965..11440989 (25 bp)
CTCCGGAGCCAGACGTCGGCCAGAA
LOC_Os03g20280
OsAffx.26607.2.S1_at--582--3831Chr03:11440978..11441002 (25 bp)
CGTCGGCCAGAAGCCCAACAAGGTA
LOC_Os03g20280
OsAffx.26607.2.S1_at--399--2891NONE
AAGGGTGCGGGATCATCAACTGCGC
NONE
OsAffx.26607.2.S1_at--937--7774Chr05:12825094..12825113 (20 bp)
GGTGCGGGATCATCAACTGCGCGTC
LOC_Os05g22750
OsAffx.26607.2.S1_at--175--4211Chr03:11442114..11442138 (25 bp)
CCCGCCTCCTCATATGAAGGATGAG
LOC_Os03g20280
OsAffx.26607.2.S1_at--815--691Chr03:11442134..11442158 (25 bp)
ATGAGCGCGCGGCTTCTGGCTCTAT
LOC_Os03g20280
OsAffx.26607.2.S1_at--310--9551Chr03:11442154..11442178 (25 bp)
TCTATCTGCTCCACCTGGGTCATCA
LOC_Os03g20280
OsAffx.26607.2.S1_at--1088--7691Chr03:11442170..11442194 (25 bp)
GGGTCATCACCAACACACAGTCGTC
LOC_Os03g20280
OsAffx.26607.2.S1_at--273--9671Chr03:11442176..11442200 (25 bp)
TCACCAACACACAGTCGTCCAGTGG
LOC_Os03g20280
Target Sequence 
GGCTTGGGTGCATCGCGGTGCCGCACCCGGTGGGAGGCCGCCTTAGCGTGCGCGAGCAGGAGGAGCGCCAGCATCTCGGG
GTGCCGCTGCTCCGCAACCGCACTCACCCGCCCCTCTGCTCCACCCACGTCCGCCCGTCGTCACCGCTCCGGAGCCAGAC
GTCGGCCAGAAGCCCAACAAGGTAGAAGCAGCACCGCCACCTGCGACTGCTCCGGTGACCCGGAGCGCGGGAAGGGTGCG
GGATCATCAACTGCGCGTCACGGTTGGTACGACATCATTTGTGGTGTAGCGATTGCACGACATCCTGGACTTGTTCTGGT
TGGTAGCCACGTCGCAAACGTCGCACTCGATCAAAGCGAGAATTATCCCCTCACCAGAAGATCGGGCCACGAGAGAGAGC
GTCATCAGACCCCGCCTCCTCATATGAAGGATGAGCGCGCGGCTTCTGGCTCTATCTGCTCCACCTGGGTCATCACCAAC
ACACAGTCGTCCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26607.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis