Browse Element(s) Details


Os.50622.1.S1_at

Description gb:AK122165.1
DB_XREF= gi:37991811
TID=Os.50622.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147L06, full insert sequence.
FL= gb:AK122165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0889010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein
LOC_Os07g08880Os.33074.1.S1_at10/117+4604998..4612898ES43, putative, expressed
LOC_Os07g08890Os.50622.1.S1_at10/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890OsAffx.21785.2.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890Os.53962.1.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50622.1.S1_at--246--9491Chr07:4620481..4620505 (25 bp)
TCTGCTTCTCTGGTCTTCATGAAGA
LOC_Os07g08890
Os.50622.1.S1_at--195--671NONE
ATGAAGATCCGCTAGCTTCTTTTGC
NONE
Os.50622.1.S1_at--311--4431Chr07:4620525..4620549 (25 bp)
GCCATGTTCCAGAATCTAGGCCATC
LOC_Os07g08890
Os.50622.1.S1_at--182--8971Chr07:4620541..4620565 (25 bp)
TAGGCCATCTTAACCTTTACCGGTG
LOC_Os07g08890
Os.50622.1.S1_at--489--2391Chr07:4620579..4620603 (25 bp)
AAACTGACATTTCGCGCTGGATGGT
LOC_Os07g08890
Os.50622.1.S1_at--1099--8571Chr07:4620600..4620624 (25 bp)
TGGTTCCCTAACCTGAAACACCTGT
LOC_Os07g08890
Os.50622.1.S1_at--673--1751Chr07:4620619..4620643 (25 bp)
ACCTGTACCTGAGCTCCATGAATGA
LOC_Os07g08890
Os.50622.1.S1_at--319--2431Chr07:4620711..4620735 (25 bp)
AAAAGCTTAACATCTGTGCCACAGG
LOC_Os07g08890
Os.50622.1.S1_at--392--10831Chr07:4620739..4620763 (25 bp)
TTGTGCATCTTAGGTCACTCCAGCA
LOC_Os07g08890
Os.50622.1.S1_at--489--3411Chr07:4620759..4620783 (25 bp)
CAGCAGCTGTGCATTGGATCATTGA
LOC_Os07g08890
Os.50622.1.S1_at--565--9391Chr07:4620817..4620841 (25 bp)
TCGATCGGTGGATTGTTCGGCACAT
LOC_Os07g08890
Target Sequence 
TCTGCTTCTCTGGTCTTCATGAAGATCCGCTAGCTTCTTTTGCTGCCATGTTCCAGAATCTAGGCCATCTTAACCTTTAC
CGGTGCTTCGACGGGGCGAAACTGACATTTCGCGCTGGATGGTTCCCTAACCTGAAACACCTGTACCTGAGCTCCATGAA
TGAGCTCAGGGAGGTTGAGGTTGAGGATGGCGCCATGAGAAGCTTGTGGAGACTTGAGCTTTGGAGCTTGAAAAGCTTAA
CATCTGTGCCACAGGGCTTTGTGCATCTTAGGTCACTCCAGCAGCTGTGCATTGGATCATTGATGCCTGAAGAGTTCCAC
AGGAGGTTAGAGGGAATCGATCGGTGGATTGTTCGGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis