Browse Element(s) Details


OsAffx.5256.1.S1_at

Description tigr:9635.m00841
TID=OsAffx.5256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0886011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08830Os.5047.1.S1_at1/117+4566194..4566436expressed protein
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein
LOC_Os07g08880Os.33074.1.S1_at10/117+4604998..4612898ES43, putative, expressed
LOC_Os07g08890Os.50622.1.S1_at10/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890OsAffx.21785.2.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890Os.53962.1.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5256.1.S1_at--880--991Chr07:4591949..4591973 (25 bp)
AGGATTGTGCTACCTGCACCAGAGT
LOC_Os07g08860
OsAffx.5256.1.S1_at--718--3371Chr07:4591933..4591957 (25 bp)
CACCAGAGTTGTCGCGAATGCATCA
LOC_Os07g08860
OsAffx.5256.1.S1_at--1158--3671Chr07:4591715..4591739 (25 bp)
CTTTGGCATGGTACTATTGGAAATC
LOC_Os07g08860
OsAffx.5256.1.S1_at--459--5591Chr07:4591677..4591701 (25 bp)
GAAATTCACCTAAAGTATCTGCTAG
LOC_Os07g08860
OsAffx.5256.1.S1_at--114--6911Chr07:4591663..4591687 (25 bp)
GTATCTGCTAGCAACAGCTATCATG
LOC_Os07g08860
OsAffx.5256.1.S1_at--842--4871Chr07:4591647..4591671 (25 bp)
GCTATCATGGTGCTTATTTTCCTGT
LOC_Os07g08860
OsAffx.5256.1.S1_at--520--4891Chr07:4591636..4591660 (25 bp)
GCTTATTTTCCTGTGCGAGCAATTA
LOC_Os07g08860
OsAffx.5256.1.S1_at--678--7331Chr07:4591591..4591615 (25 bp)
GTGCATAGTTTGATGGATCCACGAT
LOC_Os07g08860
OsAffx.5256.1.S1_at--1100--6351Chr07:4591576..4591600 (25 bp)
GATCCACGATTACATGACGACTTCA
LOC_Os07g08860
OsAffx.5256.1.S1_at--1118--5591Chr07:4591501..4591525 (25 bp)
GAAATTGAGTCTGATCGGCCGACAA
LOC_Os07g08860
OsAffx.5256.1.S1_at--585--8431Chr07:4591460..4591484 (25 bp)
GGCCATTGAGGGTCTACATGAGCTT
LOC_Os07g08860
Target Sequence 
AGGATTGTGCTACCTGCACCAGAGTTGTCGCGAATGCATCATACACTGTGATATTAAACCAGAAAACATACTTCTGAATG
AATCATTTGTTCCTAAGATTGCAGATTTTGGGATGGCAGCGATTGTAGGAAGGGATTTTAGCCGAGTTCTAACTACATTC
AGAGGTACTGTAGGGTATCTTGCCCCAGAGTGGCTTAGCGGAGTTGCTATTACACCAAAAGTTGATGTTTACAGCTTTGG
CATGGTACTATTGGAAATCATATCAGGAAGGAGAAATTCACCTAAAGTATCTGCTAGCAACAGCTATCATGGTGCTTATT
TTCCTGTGCGAGCAATTAACAAGCTTCATGTGGGAGATGTGCATAGTTTGATGGATCCACGATTACATGACGACTTCAGT
TTGGAAGAGGCTGAAAGAGTTTGCAAAGTTGCATGTTGGTGCATCCAAGAAATTGAGTCTGATCGGCCGACAATGGGTGA
AGTGGTCCGGGCCATTGAGGGTCTACATGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis