Browse Element(s) Details


Os.39054.1.A1_s_at

Description gb:BU672872
DB_XREF= gi:23512862
DB_XREF=NL_7_52
CLONE=NL_7_52
TID=Os.39054.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39054 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0884011/11Thioredoxin H-type 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08810Os.53042.1.S1_at11/117+4543224..4551253expressed protein
LOC_Os07g08820NANA7+4554927..4557518C-Myc binding protein, putative
LOC_Os07g08830Os.5047.1.S1_at1/117+4566194..4566436expressed protein
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39054.1.A1_s_at--1115--8651Chr07:4572698..4572722 (25 bp)
TGTGGAAATTTGGATCTGGCTATTC
LOC_Os07g08840
Os.39054.1.A1_s_at--372--8151Chr07:4572695..4572719 (25 bp)
GGAAATTTGGATCTGGCTATTCTGT
LOC_Os07g08840
Os.39054.1.A1_s_at--500--2251Chr07:4572693..4572717 (25 bp)
AAATTTGGATCTGGCTATTCTGTAC
LOC_Os07g08840
Os.39054.1.A1_s_at--1006--211Chr07:4572691..4572715 (25 bp)
ATTTGGATCTGGCTATTCTGTACGA
LOC_Os07g08840
Os.39054.1.A1_s_at--470--10231Chr07:4572690..4572714 (25 bp)
TTTGGATCTGGCTATTCTGTACGAG
LOC_Os07g08840
Os.39054.1.A1_s_at--658--10851Chr07:4572689..4572713 (25 bp)
TTGGATCTGGCTATTCTGTACGAGT
LOC_Os07g08840
Os.39054.1.A1_s_at--1025--8551Chr07:4572688..4572712 (25 bp)
TGGATCTGGCTATTCTGTACGAGTT
LOC_Os07g08840
Os.39054.1.A1_s_at--426--7971Chr07:4572687..4572711 (25 bp)
GGATCTGGCTATTCTGTACGAGTTT
LOC_Os07g08840
Os.39054.1.A1_s_at--1041--6391Chr07:4572686..4572710 (25 bp)
GATCTGGCTATTCTGTACGAGTTTG
LOC_Os07g08840
Os.39054.1.A1_s_at--1014--9451Chr07:4572684..4572708 (25 bp)
TCTGGCTATTCTGTACGAGTTTGCT
LOC_Os07g08840
Os.39054.1.A1_s_at--442--8491Chr07:4572682..4572706 (25 bp)
TGGCTATTCTGTACGAGTTTGCTGA
LOC_Os07g08840
Target Sequence 
TGTGGAAATTTGGATCTGGCTATTCTGTACGAGTTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39054.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis