Browse Element(s) Details


OsAffx.28352.1.S1_at

Description tigr:9635.m00840
TID=OsAffx.28352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0885010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08830Os.5047.1.S1_at1/117+4566194..4566436expressed protein
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08870OsAffx.28353.1.S1_at11/117+4594706..4595839hypothetical protein
LOC_Os07g08880Os.33074.1.S1_at10/117+4604998..4612898ES43, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28352.1.S1_at--332--51Chr07:4587709..4587733 (25 bp)
ATTGCTACCATATGGGACTGTCCTA
LOC_Os07g08850
OsAffx.28352.1.S1_at--307--10471Chr07:4587916..4587940 (25 bp)
TTACTTGCACTACCTAAACTTCGGG
LOC_Os07g08850
OsAffx.28352.1.S1_at--743--3271NONE
CAACAGCTACATGGGTGGTCCGCAA
NONE
OsAffx.28352.1.S1_at--900--7791Chr07:4588739..4588763 (25 bp)
GGTCCGCAATCATATAGTAGGCCTT
LOC_Os07g08850
OsAffx.28352.1.S1_at--604--6911Chr07:4588755..4588779 (25 bp)
GTAGGCCTTGGCTTAACGTGAGAGT
LOC_Os07g08850
OsAffx.28352.1.S1_at--151--7391Chr07:4588772..4588796 (25 bp)
GTGAGAGTTTTCTACTTCCGTGTCC
LOC_Os07g08850
OsAffx.28352.1.S1_at--707--9251Chr07:4588794..4588818 (25 bp)
TCCTCTTTCGGCAACTTGTTGGTGT
LOC_Os07g08850
OsAffx.28352.1.S1_at--733--9791Chr07:4588831..4588855 (25 bp)
TAAGCGGTGTTCACTAGTCCTGAGT
LOC_Os07g08850
OsAffx.28352.1.S1_at--313--6131Chr07:4588852..4588876 (25 bp)
GAGTGGTCTCGATGTCTGTGACGAT
LOC_Os07g08850
OsAffx.28352.1.S1_at--66--451Chr07:4588884..4588908 (25 bp)
ATCTAAGTAGTAGCCCTCGAGCCAA
LOC_Os07g08850
OsAffx.28352.1.S1_at--1133--1691Chr07:4588903..4588927 (25 bp)
AGCCAACGTCGGTGGTGCTATCGAT
LOC_Os07g08850
Target Sequence 
ATTGCTACCATATGGGACTGTCCTAACTCGGATGGAATTACCAATGGATCACAAAAGTGCCAATTGTTTTACTTGCACTA
CCTAAACTTCGGGTACACAAAACTGAAAGACATACCGAGATTGATAGGGAAGCTTAGCAATCTGCAAATGCTTTATCTCA
ATGGTTCTGTACTGGAGTTGCCAAGTGAAACCACAATGTTAACTAAGCTTCACCACCTACTCGTAGATGGGCGGTTTGGG
ATGTCAGCAAGTAGCAAAATAAGTCAACTGCAACATCTACAGTCTCTGAGAAGCATAGAAGCCAACAGCTACATGGGTGG
TCCGCAATCATATAGTAGGCCTTGGCTTAACGTGAGAGTTTTCTACTTCCGTGTCCTCTTTCGGCAACTTGTTGGTGTTA
AGGAATTCGATAAGCGGTGTTCACTAGTCCTGAGTGGTCTCGATGTCTGTGACGATTTTGTCAATCTAAGTAGTAGCCCT
CGAGCCAACGTCGGTGGTGCTATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis