Browse Element(s) Details


Os.5047.1.S1_at

Description gb:AK070315.1
DB_XREF= gi:32980339
TID=Os.5047.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050P21, full insert sequence.
FL= gb:AK070315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g088301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08810Os.53042.1.S1_at11/117+4543224..4551253expressed protein
LOC_Os07g08820NANA7+4554927..4557518C-Myc binding protein, putative
LOC_Os07g08830Os.5047.1.S1_at1/117+4566194..4566436expressed protein
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08850OsAffx.28352.1.S1_at10/117+4583508..4588966hypothetical protein
LOC_Os07g08860OsAffx.5256.1.S1_at11/117+4591394..4593907D-mannose binding lectin family protein
LOC_Os07g08860OsAffx.15908.2.S1_x_at1/117+4591394..4593907D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5047.1.S1_at--786--851Chr07:4566591..4566615 (25 bp)
ATGGCAGCTCCCAGCTCGTGGGACA
NONE
Os.5047.1.S1_at--62--7491Chr07:4566574..4566598 (25 bp)
GTGGGACACCTCCTTCCACGAAGCA
NONE
Os.5047.1.S1_at--869--10671Chr07:4566561..4566585 (25 bp)
TTCCACGAAGCAACCACAGCAAGGC
NONE
Os.5047.1.S1_at--149--5171Chr07:4566552..4566576 (25 bp)
GCAACCACAGCAAGGCAATAGCGCC
NONE
Os.5047.1.S1_at--735--4371Chr07:4566512..4566536 (25 bp)
CCACAGCTGCTGATTCGTAGGAGGA
NONE
Os.5047.1.S1_at--827--4391Chr07:4566483..4566507 (25 bp)
GCCAGGGAGGGATTCGTTGATTTTA
NONE
Os.5047.1.S1_at--1074--6571Chr07:4566473..4566497 (25 bp)
GATTCGTTGATTTTATTTGGCAGGG
NONE
Os.5047.1.S1_at--559--10391Chr07:4566461..4566485 (25 bp)
TTATTTGGCAGGGAAGGAGATCCGA
NONE
Os.5047.1.S1_at--1026--5631Chr07:4566205..4566229 (25 bp)
GACACCGCGGAGATCATCCTCTACG
LOC_Os07g08830
Os.5047.1.S1_at--290--6371Chr07:4566150..4566174 (25 bp)
GATCCAGACGCTTCACGCGGAAATG
NONE
Os.5047.1.S1_at--259--4351Chr07:4566147..4566171 (25 bp)
CCAGACGCTTCACGCGGAAATGGAG
NONE
Target Sequence 
ATGGCAGCTCCCAGCTCGTGGGACACCTCCTTCCACGAAGCAACCACAGCAAGGCAATAGCGCCACCCACCGCTCGCATC
CACAGCTGCTGATTCGTAGGAGGAGCAGGCCAGGGAGGGATTCGTTGATTTTATTTGGCAGGGAAGGAGATCCGAGAGGA
AGAAGGGGAATATAGATCGATGGGGAAGTACGTGGAGCTGCTCGACATGGGGGTGCGCATCGCCGCGCGGTTCCACTCCC
ACTGCCCGCAGACGGCGAGGATGTACTACCACCCGCCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGT
TCGGCCGACGGCGGCGGCGGCGGCTGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGGGCCGCCGCCGACACCGCGGAGAT
CATCCTCTACGCCGTCGTCTAGAGTTAGCCTCTAGACTCTCGATCCAGACGCTTCACGCGGAAATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis