Browse Element(s) Details


Os.53042.1.S1_at

Description gb:AK070572.1
DB_XREF= gi:32980596
TID=Os.53042.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055P17, full insert sequence.
FL= gb:AK070572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0881011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08790Os.7656.1.S1_at11/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08790OsAffx.28847.1.S1_at1/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08800NANA7+4539164..4539406hypothetical protein
LOC_Os07g08810Os.53042.1.S1_at11/117+4543224..4551253expressed protein
LOC_Os07g08820NANA7+4554927..4557518C-Myc binding protein, putative
LOC_Os07g08830Os.5047.1.S1_at1/117+4566194..4566436expressed protein
LOC_Os07g08840Os.39054.1.A1_s_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed
LOC_Os07g08840Os.11037.1.S1_a_at11/117+4572556..4574534Thioredoxin H-type 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53042.1.S1_at--423--1311Chr07:4550655..4550679 (25 bp)
AGATGTTACAACAACCTTCGCGCAA
LOC_Os07g08810
Os.53042.1.S1_at--923--2631Chr07:4550667..4550691 (25 bp)
AACCTTCGCGCAATGTGCAGCAGGA
LOC_Os07g08810
Os.53042.1.S1_at--816--1191Chr07:4550698..4550722 (25 bp)
AGTATTTGTCGATTTCTTCTGCCAC
LOC_Os07g08810
Os.53042.1.S1_at--180--3351Chr07:4550720..4550744 (25 bp)
CACCCAGGACGGCTTGAGAATCAAG
LOC_Os07g08810
Os.53042.1.S1_at--10--6071Chr07:4550755..4550779 (25 bp)
GAGTTCCCATGTTAGAGCACTCCAA
LOC_Os07g08810
Os.53042.1.S1_at--137--6551Chr07:4550791..4550815 (25 bp)
GATTTTGCTGTGAAGAAGGGCCCAA
LOC_Os07g08810
Os.53042.1.S1_at--969--10591Chr07:4550863..4550887 (25 bp)
TTCTGTTGGCAGAATGCAGGCTTTT
LOC_Os07g08810
Os.53042.1.S1_at--616--8291Chr07:4550881..4550905 (25 bp)
GGCTTTTTGCAGTTGTATATCCTCA
LOC_Os07g08810
Os.53042.1.S1_at--1059--6531Chr07:4550934..4550958 (25 bp)
GATTTTCTTCTATATCGTCCATAAA
LOC_Os07g08810
Os.53042.1.S1_at--1150--231Chr07:4550960..4550984 (25 bp)
ATATACGCAGCCTAGTGCTTCAAGA
LOC_Os07g08810
Os.53042.1.S1_at--579--1971Chr07:4550988..4551012 (25 bp)
ACTGATGCCGTGTTTAAGATGTTCG
LOC_Os07g08810
Target Sequence 
AGATGTTACAACAACCTTCGCGCAATGTGCAGCAGGAAAGACGAGTATTTGTCGATTTCTTCTGCCACCCAGGACGGCTT
GAGAATCAAGTCAGAGAGATGAGTTCCCATGTTAGAGCACTCCAAGAGTGATCTTCGATTTTGCTGTGAAGAAGGGCCCA
ATAAATAATTCTTTTGATTCTTAAAAAATCAGCATCGTGCACCCTGTCTTCTGTTGGCAGAATGCAGGCTTTTTGCAGTT
GTATATCCTCAGCATAAAAAAATTTAGAGTTATGGTACAGATTTTCTTCTATATCGTCCATAAAAATATACGCAGCCTAG
TGCTTCAAGAATAACTGATGCCGTGTTTAAGATGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis