Browse Element(s) Details


Os.7656.1.S1_at

Description gb:AK058768.1
DB_XREF= gi:32968786
TID=Os.7656.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-E11, full insert sequence.
FL= gb:AK058768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0879011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein
LOC_Os07g08790Os.7656.1.S1_at11/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08790OsAffx.28847.1.S1_at1/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08800NANA7+4539164..4539406hypothetical protein
LOC_Os07g08810Os.53042.1.S1_at11/117+4543224..4551253expressed protein
LOC_Os07g08820NANA7+4554927..4557518C-Myc binding protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0010015biological_processroot morphogenesis
GO:0010031biological_processcircumnutation
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7656.1.S1_at--991--5971Chr07:4534530..4534554 (25 bp)
GAGAAAGAGCTGCAGCGATACCCCT
LOC_Os07g08790
Os.7656.1.S1_at--141--511Chr07:4534601..4534625 (25 bp)
ATCGTCACAGTATTGGGAACTCCAA
LOC_Os07g08790
Os.7656.1.S1_at--857--4991Chr07:4534637..4534661 (25 bp)
GCAGGACCCAATGTTCTCCGAAGAG
LOC_Os07g08790
Os.7656.1.S1_at--952--1031Chr07:4534731..4534755 (25 bp)
AGGTGCTGCGAATGTTGCTGTACAA
LOC_Os07g08790
Os.7656.1.S1_at--33--2091Chr07:4534752..4534776 (25 bp)
ACAAACCTAACTCATGATCCATTCC
LOC_Os07g08790
Os.7656.1.S1_at--296--4331Chr07:4534776..4534800 (25 bp)
CCATTCCCGTGCAATTTTTCGATTT
LOC_Os07g08790
Os.7656.1.S1_at--822--171Chr07:4534802..4534826 (25 bp)
ATTTATACCTCACATCGCCGATGAC
LOC_Os07g08790
Os.7656.1.S1_at--276--9631Chr07:4534831..4534855 (25 bp)
TCATGTCCCGACAACAGTGTGTTTG
LOC_Os07g08790
Os.7656.1.S1_at--27--4951Chr07:4534875..4534899 (25 bp)
GCATTCTCCTTGTAAGAACCTTGGT
LOC_Os07g08790
Os.7656.1.S1_at--335--5851Chr07:4534905..4534929 (25 bp)
GACCATGTGGTATTCCGTGTTGTAA
LOC_Os07g08790
Os.7656.1.S1_at--681--3931Chr07:4535028..4535052 (25 bp)
CGGCGTTCGCAGATCCTATGGTATT
LOC_Os07g08790
Target Sequence 
GAGAAAGAGCTGCAGCGATACCCCTCATACACCAGAGGGTAAAAATGGAAGTGCAGCATGTTGCNGGTTACATCGTCACA
GTATTGGGAACTCCAAAGAAGTTAACAGCAGGACCCAATGTTCTCCGAAGAGTGCTCCAAAGACTGGAGTAGCCGCAAAA
CCCAGAGCGACCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTGCTGTACAAACCTAACTCATGAT
CCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTG
TGTTTGTTGCTGGATTATTTTTTTTNGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTA
AATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATCTGGCAGCCGATAGGCTGTTGGTGTGA
CATTGTTGTTGATGTATGGCGGCGTTCGCAGATCCTATGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis