Browse Element(s) Details


Os.22262.3.S1_a_at

Description gb:CB682852
DB_XREF= gi:29686577
DB_XREF=OSJNEf10J07.r
CLONE=OSJNEf10J07
TID=Os.22262.3
CNT=39
FEA=EST
TIER=Stack
STK=9
UG=Os.22262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059B01, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0876011/11Nodule membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein
LOC_Os07g08790Os.7656.1.S1_at11/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08790OsAffx.28847.1.S1_at1/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22262.3.S1_a_at--1155--8851Chr07:4502004..4502028 (25 bp)
TGATGATGAGTGATCAGCACCCTAC
LOC_Os07g08760
Os.22262.3.S1_a_at--937--2791Chr07:4501965..4501989 (25 bp)
AAGATGGCGTTGAGCTCTCTTGCGC
LOC_Os07g08760
Os.22262.3.S1_a_at--308--4551Chr07:4501944..4501968 (25 bp)
GCGCTTCAGACTGTGCATGTTGCAA
LOC_Os07g08760
Os.22262.3.S1_a_at--435--10031Chr07:4501885..4501909 (25 bp)
TAGATGCGGTGCTACTACAGGAGGC
LOC_Os07g08760
Os.22262.3.S1_a_at--517--10451Chr07:4501854..4501878 (25 bp)
TTAGCACGCTTAATTTTGGATCTCG
LOC_Os07g08760
Os.22262.3.S1_a_at--1125--10231Chr07:4501840..4501864 (25 bp)
TTTGGATCTCGTATTTATGCAGTAT
LOC_Os07g08760
Os.22262.3.S1_a_at--856--10131Chr07:4501825..4501849 (25 bp)
TATGCAGTATCGCTGTCGCACATGT
LOC_Os07g08760
Os.22262.3.S1_a_at--312--7231Chr07:4501811..4501835 (25 bp)
GTCGCACATGTGTATCGTCACCATA
LOC_Os07g08760
Os.22262.3.S1_a_at--610--7431Chr07:4501802..4501826 (25 bp)
GTGTATCGTCACCATAACGTAACAA
LOC_Os07g08760
Os.22262.3.S1_a_at--389--1891Chr07:4501786..4501810 (25 bp)
ACGTAACAACAGATCGTCGTCTCTG
LOC_Os07g08760
Os.22262.3.S1_a_at--304--7211Chr07:4501771..4501795 (25 bp)
GTCGTCTCTGGCTAATGTACCTGAA
LOC_Os07g08760
Target Sequence 
TGATGATGAGTGATCAGCACCCTACCTGTCAGCTTNTGCAAGATGGCGTTGAGCTCTCTTGCGCTTCAGACTGTGCATGT
TGCAAGTAGAGAAGAGGTAAAGCGAAAAAAAAAANGGACATAGATGCGGTGCTACTACAGGAGGCAGATAATTAGCACGC
TTAATTTTGGATCTCGTATTTATGCAGTATCGCTGTCGCACATGTGTATCGTCACCATAACGTAACAACAGATCGTCGTC
TCTGGCTAATGTACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22262.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis