Browse Element(s) Details


Os.51984.1.S2_at

Description gb:AK064466.1
DB_XREF= gi:32974484
TID=Os.51984.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G10, full insert sequence.
FL= gb:AK064466.1 gb:AK102995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0872911/11ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51984.1.S2_at--291--7071Chr07:4489527..4489551 (25 bp)
GTAAGTTTTATCCATCGAGACAGAA
LOC_Os07g08729
Os.51984.1.S2_at--606--2331Chr07:4489571..4489595 (25 bp)
AAAGTTGGACTCTTGTGCATCTGTA
LOC_Os07g08729
Os.51984.1.S2_at--392--991Chr07:4489618..4489642 (25 bp)
AGGATGGACCATAGCAGCAACTTGC
LOC_Os07g08729
Os.51984.1.S2_at--380--2351Chr07:4489643..4489667 (25 bp)
AAAGCACAGGCTTTTTTAGCTAGTT
LOC_Os07g08729
Os.51984.1.S2_at--245--7011Chr07:4489677..4489701 (25 bp)
GTACTCAAGTGTCCATAGAAGCCCT
LOC_Os07g08729
Os.51984.1.S2_at--845--5411Chr07:4489694..4489718 (25 bp)
GAAGCCCTAATGATGCATTCCACTT
LOC_Os07g08729
Os.51984.1.S2_at--206--10153Chr07:4489781..4489805 (25 bp)
TATCCATGCTAATCCAGTTCTTCCA
LOC_Os07g08729
Os.51984.1.S2_at--714--991Chr07:4489845..4489869 (25 bp)
AGGAGGCCTCCCATCTGGATGACAG
LOC_Os07g08729
Os.51984.1.S2_at--831--9811Chr07:4489938..4489962 (25 bp)
TAAACCAGTCCAATCACTTAACCCA
LOC_Os07g08729
Os.51984.1.S2_at--433--831Chr07:4489984..4490008 (25 bp)
ATGGATACCTTGTTGGTCTGGCCAC
LOC_Os07g08729
Os.51984.1.S2_at--866--671Chr07:4490053..4490077 (25 bp)
ATGAAATGCGTCTGTGCTGCCAACT
LOC_Os07g08729
Target Sequence 
GTAAGTTTTATCCATCGAGACAGAACAGAAACATAAATAACTGAAAAGTTGGACTCTTGTGCATCTGTAAGATTTGAGTG
AATAAACACTAAGGATGGACCATAGCAGCAACTTGCAAAGCACAGGCTTTTTTAGCTAGTTTATGCAAAGGTACTCAAGT
GTCCATAGAAGCCCTAATGATGCATTCCACTTATACTTAAAATGGAAAATGTCAACTAAACCAAAACCATCGCCAATTAA
TGTAGTCCTTTAATTATCCATGCTAATCCAGTTCTTCCATAATTATGCCTACTAACATAAGATGCCATAAGTAATTACAG
GAGGCCTCCCATCTGGATGACAGGAGAGATAGATTGCTTTTAGCAAGAAAACTGAATAATATTTTTTAACACAAAAAATC
GCAAGATACAATAAACCAGTCCAATCACTTAACCCAAATGAGAAAACTGTATGCCAGATGGATACCTTGTTGGTCTGGCC
ACAATATAGAACACTCAAGAAATCTAGAACGCTAAAGATGTGCTCAATGAAATGCGTCTGTGCTGCCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51984.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis