Browse Element(s) Details


Os.9515.1.S1_at

Description gb:AK060552.1
DB_XREF= gi:32970570
TID=Os.9515.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A06, full insert sequence.
FL= gb:AK060552.1 gb:AK072273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0875011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9515.1.S1_at--737--431Chr07:4497375..4497399 (25 bp)
ATCTTCATTGGCTTCAGTTAGTTAC
LOC_Os07g08750
Os.9515.1.S1_at--1139--4891Chr07:4497365..4497389 (25 bp)
GCTTCAGTTAGTTACATGCATGGCT
LOC_Os07g08750
Os.9515.1.S1_at--699--9051Chr07:4497349..4497373 (25 bp)
TGCATGGCTGTATCTAGCATTCTCT
LOC_Os07g08750
Os.9515.1.S1_at--582--3871Chr07:4497342..4497366 (25 bp)
CTGTATCTAGCATTCTCTGACCATA
LOC_Os07g08750
Os.9515.1.S1_at--290--451Chr07:4497338..4497362 (25 bp)
ATCTAGCATTCTCTGACCATAAATC
LOC_Os07g08750
Os.9515.1.S1_at--32--5851Chr07:4497324..4497348 (25 bp)
GACCATAAATCAGTAGTGCAAGAAA
LOC_Os07g08750
Os.9515.1.S1_at--492--5171Chr07:4497307..4497331 (25 bp)
GCAAGAAAGTGCAATCAGGAAAGAT
LOC_Os07g08750
Os.9515.1.S1_at--290--3491Chr07:4497292..4497316 (25 bp)
CAGGAAAGATGCATATGTTTTTCAT
LOC_Os07g08750
Os.9515.1.S1_at--714--6811Chr07:4497276..4497300 (25 bp)
GTTTTTCATTCATATTTGGTACGTC
LOC_Os07g08750
Os.9515.1.S1_at--860--9591Chr07:4497271..4497295 (25 bp)
TCATTCATATTTGGTACGTCTCTTA
LOC_Os07g08750
Os.9515.1.S1_at--1158--10831Chr07:4497261..4497285 (25 bp)
TTGGTACGTCTCTTATTCAAAGAAG
LOC_Os07g08750
Target Sequence 
ATCTTCATTGGCTTCAGTTAGTTACATGCATGGCTGTATCTAGCATTCTCTGACCATAAATCAGTAGTGCAAGAAAGTGC
AATCAGGAAAGATGCATATGTTTTTCATTCATATTTGGTACGTCTCTTATTCAAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis