Browse Element(s) Details


OsAffx.31822.1.A1_at

Description tigr:9640.m02019
TID=OsAffx.31822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g087296/11ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os03g022003/11Thymidine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004797molecular_functionthymidine kinase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31822.1.A1_at--319--9591NONE
TCTTGTTCAATAATCGTCCACCCAT
NONE
OsAffx.31822.1.A1_at--925--9492Chr12:14962392..14962416 (25 bp)
TCTCCACGCGTGAAGACCGAGCGAA
NONE
OsAffx.31822.1.A1_at--657--4071Chr12:11898695..11898719 (25 bp)
CGAGCGAAGATTACGGGTCTGTTTG
NONE
OsAffx.31822.1.A1_at--882--71711Chr07:11889653..11889677 (25 bp)
GTCTGTTTGGTTGTTGCCTAACATT
NONE
OsAffx.31822.1.A1_at--913--108511Chr07:4492705..4492729 (25 bp)
TTGGTTGTTGCCTAACATTGCCATA
LOC_Os07g08729
OsAffx.31822.1.A1_at--882--9816Chr07:4492717..4492741 (25 bp)
TAACATTGCCATAACTCAGTTTGCC
LOC_Os07g08729
OsAffx.31822.1.A1_at--93--3573Chr07:4492726..4492750 (25 bp)
CATAACTCAGTTTGCCATAGGTGTG
LOC_Os07g08729
OsAffx.31822.1.A1_at--187--3577Chr07:11889695..11889719 (25 bp)
CATAGGTGTGGCATGGCAAACAAAG
NONE
OsAffx.31822.1.A1_at--825--51311Chr12:25975016..25975036 (21 bp)
GCAAACAAAGTGTGGCCAACAATTT
NONE
OsAffx.31822.1.A1_at--635--2871Chr12:11898400..11898612 (25 bp)
AAGTGTGGCAATGTTTGGTCCTGGC
NONE
OsAffx.31822.1.A1_at--114--2871Chr12:11898391..11898603 (25 bp)
AATGTTTGGTCCTGGCGTTGTCGTC
NONE
Target Sequence 
TCTTGTTCAATAATCGTCCACCCATCTCCACCGCACGATTTCACCCTCTCCACGCGTGAAGACCGAGCGAAGATTACGGG
TCTGTTTGGTTGTTGCCTAACATTGCCATAACTCAGTTTGCCATAGGTGTGGCATGGCAAACAAAGTGTGGCCAACAATT
TGTTGGCCACAAGTGTGGCAATGTTTGGTCCTGGCGTTGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31822.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis