Browse Element(s) Details


OsAffx.28351.1.S1_at

Description tigr:9635.m00833
TID=OsAffx.28351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0878011/11hypothetical protein
LOC_Os03g104401/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed
LOC_Os07g08780OsAffx.28351.1.S1_at11/117+4517705..4517983hypothetical protein
LOC_Os07g08790Os.7656.1.S1_at11/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08790OsAffx.28847.1.S1_at1/117+4529078..4535080Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g08800NANA7+4539164..4539406hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28351.1.S1_at--1157--5431Chr07:4517740..4517764 (25 bp)
GAACCCCGCGCAGCTTGCACGGCGA
LOC_Os07g08780
OsAffx.28351.1.S1_at--775--5011Chr07:4517781..4517805 (25 bp)
GCAGGTGGTGGCTCACCAGATCCTC
LOC_Os07g08780
OsAffx.28351.1.S1_at--314--7532Chr07:4517788..4517812 (25 bp)
GTGGCTCACCAGATCCTCCGGGAGA
LOC_Os07g08780
OsAffx.28351.1.S1_at--557--4831Chr07:4517791..4517815 (25 bp)
GCTCACCAGATCCTCCGGGAGAGAT
LOC_Os07g08780
OsAffx.28351.1.S1_at--482--6371Chr07:4517799..4517823 (25 bp)
GATCCTCCGGGAGAGATGCCCACGA
LOC_Os07g08780
OsAffx.28351.1.S1_at--241--7651Chr07:4517807..4517831 (25 bp)
GGGAGAGATGCCCACGACGAATCAT
LOC_Os07g08780
OsAffx.28351.1.S1_at--929--6011Chr07:4517809..4517833 (25 bp)
GAGAGATGCCCACGACGAATCATCC
LOC_Os07g08780
OsAffx.28351.1.S1_at--383--611Chr07:4517814..4517838 (25 bp)
ATGCCCACGACGAATCATCCCGAGT
LOC_Os07g08780
OsAffx.28351.1.S1_at--943--1851Chr07:4517820..4517844 (25 bp)
ACGACGAATCATCCCGAGTGGCGGC
LOC_Os07g08780
OsAffx.28351.1.S1_at--429--4111Chr07:4517824..4517848 (25 bp)
CGAATCATCCCGAGTGGCGGCGACG
LOC_Os07g08780
OsAffx.28351.1.S1_at--619--4111Chr07:4517903..4517927 (25 bp)
CGCACGGGATCAAGGCAGCCGGGCG
LOC_Os07g08780
Target Sequence 
GAACCCCGCGCAGCTTGCACGGCGACGACACGGCCGCGCGGGCAGGTGGTGGCTCACCAGATCCTCCGGGAGAGATGCCC
ACGACGAATCATCCCGAGTGGCGGCGACGGCGGAGGCGGCCGACCGGCCGTCAGCCGCCGGCGCGTGCTCCTGCTGCTGC
CTCCGCACGGGATCAAGGCAGCCGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis