Browse Element(s) Details


OsAffx.28847.1.S1_at

Description tigr:9635.m04044
TID=OsAffx.28847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4049011/11hypothetical protein
LOC_Os07g087901/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative
LOC_Os07g40530Os.40360.1.S1_x_at1/117+24284186..24284809hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010015biological_processroot morphogenesis
GO:0010031biological_processcircumnutation
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28847.1.S1_at--127--1551Chr07:24258958..24258982 (25 bp)
AGCATACTGATCTTAGCTAAGCCAA
LOC_Os07g40490
OsAffx.28847.1.S1_at--422--5531Chr07:24258991..24259015 (25 bp)
GAAACATATACAGCAAGCAGGGCCT
LOC_Os07g40490
OsAffx.28847.1.S1_at--948--2711Chr07:24259005..24259029 (25 bp)
AAGCAGGGCCTACTTGATTGTGAAA
LOC_Os07g40490
OsAffx.28847.1.S1_at--881--6531Chr07:24259548..24259572 (25 bp)
GATTTTCAATGGAGAGTTGAGCACA
LOC_Os07g40490
OsAffx.28847.1.S1_at--262--5951Chr07:24259566..24259590 (25 bp)
GAGCACATGTGGTTGGACTTTGATT
LOC_Os07g40490
OsAffx.28847.1.S1_at--31--8532Chr07:24259579..24259603 (25 bp)
TGGACTTTGATTTGGCAATTGGGAA
LOC_Os07g40490
OsAffx.28847.1.S1_at--670--7071Chr07:24259608..24259632 (25 bp)
GTAATAACTGATACTACATTGCTGA
LOC_Os07g40490
OsAffx.28847.1.S1_at--897--2071Chr07:24259623..24259647 (25 bp)
ACATTGCTGATTGTTGCTGGCGATA
LOC_Os07g40490
OsAffx.28847.1.S1_at--622--51Chr07:24259632..24259656 (25 bp)
ATTGTTGCTGGCGATACAAGACAAT
LOC_Os07g40490
OsAffx.28847.1.S1_at--302--2971Chr07:24259654..24259678 (25 bp)
AATGGAGTGTACTCACCTGTGACCT
LOC_Os07g40490
OsAffx.28847.1.S1_at--625--1091Chr07:24259659..24259683 (25 bp)
AGTGTACTCACCTGTGACCTACCTG
LOC_Os07g40490
Target Sequence 
AGCATACTGATCTTAGCTAAGCCAAACAGGTTGGAAACATATACAGCAAGCAGGGCCTACTTGATTGTGAAAGGAAAAGA
TTTTCAATGGAGAGTTGAGCACATGTGGTTGGACTTTGATTTGGCAATTGGGAACAATGTAATAACTGATACTACATTGC
TGATTGTTGCTGGCGATACAAGACAATGGAGTGTACTCACCTGTGACCTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis