Browse Element(s) Details


Os.10536.1.S1_at

Description gb:AK103165.1
DB_XREF= gi:32988374
TID=Os.10536.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121E03, full insert sequence.
FL= gb:AK065600.1 gb:AK103165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g404808/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10536.1.S1_at--892--8995Chr09:13527292..13527311 (20 bp)
TGAAGACCTGCAGCTGACAACTCTT
NONE
Os.10536.1.S1_at--910--8951Chr07:24251718..24251742 (25 bp)
TGACAACTCTTACAGCCCCAGGAAG
LOC_Os07g40480
Os.10536.1.S1_at--32--7091Chr07:24251669..24251693 (25 bp)
GTCAAGATCCACCAGCGACGGGTAT
LOC_Os07g40480
Os.10536.1.S1_at--435--5371Chr07:24251629..24251653 (25 bp)
GAAGACAGTGATCGCATCCCATCGC
LOC_Os07g40480
Os.10536.1.S1_at--365--4151Chr07:24251607..24251631 (25 bp)
CGCGGATAGTTCATCGATCTTCGAA
LOC_Os07g40480
Os.10536.1.S1_at--360--6431Chr07:24251592..24251616 (25 bp)
GATCTTCGAACTGGGCAAGCATCAT
LOC_Os07g40480
Os.10536.1.S1_at--1057--3231Chr07:24251577..24251601 (25 bp)
CAAGCATCATCCTCAGTTCTGATCA
LOC_Os07g40480
Os.10536.1.S1_at--1124--2311Chr07:24251553..24251577 (25 bp)
AAAGTGTGGCTTCATCTGGCATCCT
LOC_Os07g40480
Os.10536.1.S1_at--160--5491Chr07:24251519..24251543 (25 bp)
GAACAGGTTGTCTTGACTCCAAATC
NONE
Os.10536.1.S1_at--217--2271Chr07:24251499..24251523 (25 bp)
AAATCAATTCCATCCTCAGCTTCTT
NONE
Os.10536.1.S1_at--266--1011Chr07:24251238..24251262 (25 bp)
AGGTTGATATATCTTCAGCCTCCTG
NONE
Target Sequence 
TGAAGACCTGCAGCTGACAACTCTTACAGCCCCAGGAAGCACTCCNACAGCAAGGGATTGAGCTGTCAAGATCCACCAGC
GACGGGTATGAAGCATCAGGAGGCGAAGACAGTGATCGCATCCCATCGCGGATAGTTCATCGATCTTCGAACTGGGCAAG
CATCATCCTCAGTTCTGATCAAAGTGTGGCTTCATCTGGCATCCTCGTGCCGAAGAACAGGTTGTCTTGACTCCAAATCA
ATTCCATCCTCAGCTTCTTTCAGATGAATGAAAAATTGTAAATGGTCCGTGTAGATTGTCTCGTTTTCCATCGGTTTCTG
GTCCTCCATAGTTTCAAATCTTGTCTCAGAGATGGTTGGATGCTGCGTGAATTCTGAATTGGTTGGATGTTTTTGGTGAA
CTCTGAATTGTTAGGTAGGGAAAGAGAGTTGATTCATTCGTGGTGCATCCAAAATGGTTGTAATTTTGCTCTCAGATGAC
AATGGAATCAATCAGAGGTTGATATATCTTCAGCCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis