Browse Element(s) Details


OsAffx.28845.1.S1_x_at

Description tigr:9635.m04037
TID=OsAffx.28845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4042011/11hypothetical protein
LOC_Os10g227101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28845.1.S1_x_at--433--5411Chr07:24228159..24228183 (25 bp)
GAAGCTGAACTCCTTGTGGACACCA
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--182--8652Chr11:12369451..12369472 (22 bp)
TGTGGACACCACACTTGCAGGTATT
NONE
OsAffx.28845.1.S1_x_at--425--5631Chr07:24227832..24228165 (25 bp)
GACACCACACTTGCAGGTATTTTGG
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--276--3311Chr07:24227827..24228160 (25 bp)
CACACTTGCAGGTATTTTGGTGCGT
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--289--10251Chr07:24227812..24227836 (25 bp)
TTTGGTGCGTCAAAATGTGCAAGCA
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--65--5171Chr07:24227794..24227818 (25 bp)
GCAAGCAGAGCATGTGAATTCGTTC
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--767--5931Chr07:24227787..24227811 (25 bp)
GAGCATGTGAATTCGTTCTTCTTTC
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--383--7351Chr07:24227781..24227805 (25 bp)
GTGAATTCGTTCTTCTTTCTTTCGA
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--334--5191Chr07:24227779..24227803 (25 bp)
GAATTCGTTCTTCTTTCTTTCGATT
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--192--9891Chr07:24227748..24227772 (25 bp)
TATGCTAAGGACGAAAATGGACTGG
LOC_Os07g40420
OsAffx.28845.1.S1_x_at--996--3592Chr10:11466237..11466260 (24 bp)
GCTTTACCGGCGTGATCGTCTTCTA
LOC_Os10g22710
Target Sequence 
GAAGCTGAACTCCTTGTGGACACCACACTTGCAGGTATTTTGGTGCGTCAAAATGTGCAAGCAGAGCATGTGAATTCGTT
CTTCTTTCTTTCGATTTCATATTATGCTAAGGACGAAAATGGACTGGGGAGAGGAGGCTTTACCGGCGTGATCGTCTTCT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28845.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis