Browse Element(s) Details


OsAffx.16653.2.S1_at

Description tigr:9635.m04038
TID=OsAffx.16653.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4043411/11hypothetical protein
LOC_Os07g404042/11CobW/P47K family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16653.2.S1_at--935--2431Chr07:24233390..24233409 (20 bp)
AAAATCACATTATGGCCAGGACCAA
LOC_Os07g40434
OsAffx.16653.2.S1_at--1029--10431Chr07:24233296..24233400 (25 bp)
TTATGGCCAGGACCAAATTTGTGTT
LOC_Os07g40434
OsAffx.16653.2.S1_at--284--211Chr07:24233280..24233304 (25 bp)
ATTTGTGTTCGCCTCTACCTTCGCC
LOC_Os07g40434
OsAffx.16653.2.S1_at--534--2891Chr07:24232999..24233023 (25 bp)
AAGGTGGCCTCTTGCTTCGTCCCGA
LOC_Os07g40434
OsAffx.16653.2.S1_at--649--8671Chr07:24232962..24232986 (25 bp)
TGTGCACCGTTTCCTACTTCTTGCA
LOC_Os07g40434
OsAffx.16653.2.S1_at--505--9052Chr07:24232943..24232965 (23 bp)
TGCAGTTCTTGTGCCTCTCGAGGGC
LOC_Os07g40434
OsAffx.16653.2.S1_at--1131--2431Chr07:24232726..24232750 (25 bp)
AAAAGGACCTTATGCACCGCGAGAT
LOC_Os07g40434
OsAffx.16653.2.S1_at--772--10431Chr07:24232717..24232741 (25 bp)
TTATGCACCGCGAGATGAGGCAACG
LOC_Os07g40434
OsAffx.16653.2.S1_at--436--6031Chr07:24232675..24232699 (25 bp)
GAGATGGAAACAACCGCGTCCAAGA
LOC_Os07g40434
OsAffx.16653.2.S1_at--748--1431Chr07:24232536..24232677 (25 bp)
AGAACCGTTCCTGTATCTTGATGGT
LOC_Os07g40434
OsAffx.16653.2.S1_at--271--9592Chr07:24232521..24232545 (25 bp)
TCTTGATGGTGTCTGTGGTAGATTC
LOC_Os07g40434
Target Sequence 
AAAATCACATTATGGCCAGGACCAAATTTGTGTTCGCCTCTACCTTCGCCGCATCCACCCTCGGCTACTCCGTCGCCATC
GCCTACAGCCTCAGCGGGCGTGCAGCGAAGATGTCGCTGATCAGGCCGAGGGCTGACCACGTCGCCGGCACACCAACCAA
CTTCCGCGCTCACCAAGGTGGCCTCTTGCTTCGTCCCGACCGGTTTCGCTCTGTGCACCGTTTCCTACTTCTTGCAGTTC
TTGTGCCTCTCGAGGGCCCACCGAAGCAAAAGGACCTTATGCACCGCGAGATGAGGCAACGCGGCGGCAATGGAGGTGGA
GATGGAAACAACCGCGTCCAAGAACCGTTCCTGTATCTTGATGGTGTCTGTGGTAGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16653.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis