Browse Element(s) Details


OsAffx.16652.1.S1_at

Description tigr:9635.m04033
TID=OsAffx.16652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4038011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16652.1.S1_at--503--8491Chr07:24210019..24210042 (24 bp)
TGGAAAAGACCCTCCTGAATCCGAT
LOC_Os07g40380
OsAffx.16652.1.S1_at--204--10671Chr07:24210044..24210068 (25 bp)
TTCCTCGTGGCGCTTATGATGTACT
LOC_Os07g40380
OsAffx.16652.1.S1_at--768--751Chr07:24210062..24210086 (25 bp)
ATGTACTCGCTTCTCATCGGGAACA
LOC_Os07g40380
OsAffx.16652.1.S1_at--889--8111Chr07:24210099..24210123 (25 bp)
GGACGGCTACCCCACATGGATATGG
LOC_Os07g40380
OsAffx.16652.1.S1_at--956--771Chr07:24210176..24210200 (25 bp)
ATGTGCCTCTCATTCGTGACGGTGG
LOC_Os07g40380
OsAffx.16652.1.S1_at--614--10831Chr07:24210213..24210237 (25 bp)
TTGTGCTTGTTCTTCATCTTACGAT
LOC_Os07g40380
OsAffx.16652.1.S1_at--331--6131Chr07:24210457..24210481 (25 bp)
GAGTGGATAACCTTCTGCATCGCGG
LOC_Os07g40380
OsAffx.16652.1.S1_at--1026--7691Chr07:24210482..24210506 (25 bp)
GGGTCATCTTTGTCGTGATCAATCT
LOC_Os07g40380
OsAffx.16652.1.S1_at--317--1011Chr07:24210624..24210648 (25 bp)
AGGTTGGCTTGACTGCCTTCGAGTA
LOC_Os07g40380
OsAffx.16652.1.S1_at--1053--4431Chr07:24210638..24210662 (25 bp)
GCCTTCGAGTAGTAGGTCGTCTCTA
LOC_Os07g40380
OsAffx.16652.1.S1_at--616--1591Chr07:24210690..24210714 (25 bp)
AGCTCGAGGTTCTGTGGTTGGACAA
LOC_Os07g40380
Target Sequence 
TGGAAAAGACCCTCCTGAATCCGATCTTCCTCGTGGCGCTTATGATGTACTCGCTTCTCATCGGGAACAGCCTTAGCGGC
CGGACGGCTACCCCACATGGATATGGGGCTCCACCCCCATCTCCAGCTGGGCTCGCCACGTTCATGGGGGTCAGCTTCAT
GTGCCTCTCATTCGTGACGGTGGGCATGGTTCACCTTGTGCTTGTTCTTCATCTTACGATGTTATGGCATATGGAGGAGC
GAGTGGATAACCTTCTGCATCGCGGGGGTCATCTTTGTCGTGATCAATCTCTCAATGATGCTGAGGCCATTGAGGCAGGT
TGGCTTGACTGCCTTCGAGTAGTAGGTCGTCTCTACGTCCGCGCGTTGCCGCCAAGAGGAGGAGCTCGAGGTTCTGTGGT
TGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis