Browse Element(s) Details


OsAffx.16653.1.S1_at

Description tigr:9635.m04035
TID=OsAffx.16653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cobalamin synthesis proteinP47K, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4040411/11CobW/P47K family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16653.1.S1_at--838--5771Chr07:24219254..24219599 (25 bp)
GACGAAGCTAGTCCATACACCAAAT
LOC_Os07g40404
OsAffx.16653.1.S1_at--191--1891Chr07:24219049..24219073 (25 bp)
ACGATCTCCTTGTATGCCGTGGCGG
LOC_Os07g40404
OsAffx.16653.1.S1_at--222--3851Chr07:24218986..24219010 (25 bp)
CTGCAGGCCTGCAAGCGTCAGAGAA
LOC_Os07g40404
OsAffx.16653.1.S1_at--855--1351Chr07:24218967..24218991 (25 bp)
AGAGAACATCTCCACGCGGCAGTAT
LOC_Os07g40404
OsAffx.16653.1.S1_at--36--471Chr07:24218960..24218984 (25 bp)
ATCTCCACGCGGCAGTATCCTACGA
LOC_Os07g40404
OsAffx.16653.1.S1_at--1013--491Chr07:24218851..24218875 (25 bp)
ATCGGGCATCTTGCAGACGGAGCAG
LOC_Os07g40404
OsAffx.16653.1.S1_at--120--9011Chr07:24218745..24218766 (22 bp)
TGAAGGGCCCAAGTCAGCTCATGAT
LOC_Os07g40404
OsAffx.16653.1.S1_at--457--3211Chr07:24218736..24218760 (25 bp)
CAAGTCAGCTCATGATGCATCACAT
LOC_Os07g40404
OsAffx.16653.1.S1_at--794--6331Chr07:24218723..24218747 (25 bp)
GATGCATCACATATCAACAGCAGAG
LOC_Os07g40404
OsAffx.16653.1.S1_at--615--3271Chr07:24218709..24218733 (25 bp)
CAACAGCAGAGCACGTGAGGACTAT
LOC_Os07g40404
OsAffx.16653.1.S1_at--786--5091Chr07:24218699..24218723 (25 bp)
GCACGTGAGGACTATCGAACAGAAC
LOC_Os07g40404
Target Sequence 
GACGAAGCTAGTCCATACACCAAATCCCCCATCACCTCTCCGTCCACCTCCACACCTATCTTCACCATTTCAGCGAACAC
CATCTGCGCGCCCCACATTCTCTCTTCCTTGCACAGCCATGACACCACTGCCCGGGCCCCTCAACCGCATTCCGTCGAAC
ACCTTCATGGCGTCCGCGACAAGGTTATTCTTGAACAACGTCACCACGATCTCCTTGTATGCCGTGGCGGCCGGCTCGAG
CCCGCGCCTCTCCATCCCGTTCCATACCCTGCAGGCCTGCAAGCGTCAGAGAACATCTCCACGCGGCAGTATCCTACGAC
CAGCAGCTCGCAGCACCTCCCGGTCCGCGACACGCCGTACGCCCGTACCGGTGCTCGGCCTGCTTGATCACCTTCTCGGC
GACATCGGGCATCTTGCAGACGGAGCAGACGACGTCGGTGATGAAGGGCCCAAGTCAGCTCATGATGCATCACATATCAA
CAGCAGAGCACGTGAGGACTATCGAACAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis