Browse Element(s) Details


OsAffx.16654.1.S1_at

Description tigr:9635.m04036
TID=OsAffx.16654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to flavonoid 3-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4040410/11CobW/P47K family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein
LOC_Os07g40380OsAffx.16652.1.S1_at11/117+24209326..24210783hypothetical protein
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16654.1.S1_at--438--4011Chr07:24225595..24225619 (25 bp)
CGTCAAGGACATCCTAACATCGACC
LOC_Os07g40404
OsAffx.16654.1.S1_at--375--3531Chr07:24225239..24225602 (25 bp)
CATCGACCTCAACCAATGAGGAGAA
LOC_Os07g40404
OsAffx.16654.1.S1_at--25--3751NONE
CTCAACCAATGAGGAGAACACGGTG
NONE
OsAffx.16654.1.S1_at--567--5971Chr07:24225219..24225243 (25 bp)
GAGAACACGGTGGTCGCTGGCTACG
LOC_Os07g40404
OsAffx.16654.1.S1_at--255--4491Chr07:24225084..24225108 (25 bp)
GCCGGCAGCTGCGACGACGTAGTGG
LOC_Os07g40404
OsAffx.16654.1.S1_at--624--3831Chr07:24225076..24225100 (25 bp)
CTGCGACGACGTAGTGGACGTGCAC
LOC_Os07g40404
OsAffx.16654.1.S1_at--968--4211Chr07:24225030..24225054 (25 bp)
CCGTTCGAGTCAGGGCGGCAGATTT
LOC_Os07g40404
OsAffx.16654.1.S1_at--949--1131Chr07:24225023..24225047 (25 bp)
AGTCAGGGCGGCAGATTTATCCGGC
LOC_Os07g40404
OsAffx.16654.1.S1_at--55--1091Chr07:24225019..24225043 (25 bp)
AGGGCGGCAGATTTATCCGGCGACC
LOC_Os07g40404
OsAffx.16654.1.S1_at--636--8351Chr07:24225017..24225041 (25 bp)
GGCGGCAGATTTATCCGGCGACCAA
LOC_Os07g40404
OsAffx.16654.1.S1_at--841--3931Chr07:24225015..24225039 (25 bp)
CGGCAGATTTATCCGGCGACCAACC
LOC_Os07g40404
Target Sequence 
CGTCAAGGACATCCTAACATCGACCTCAACCAATGAGGAGAACACGGTGGTCGCTGGCTACGACGTCCCCGCCGGCACGC
GCGTGCTGGTGAACTTGTGGGCCATCGCACGCGACCCGGCGTCGTGGCTCGACCGCCCCGACGCGTTCCTGCCGGAGCGC
TTCCTCCCCGGCGCCGGCAGCTGCGACGACGTAGTGGACGTGCACGGGCAGCACTTCGAGCTGCTGCCGTTCGAGTCAGG
GCGGCAGATTTATCCGGCGACCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis