Browse Element(s) Details


OsAffx.28846.1.S1_at

Description tigr:9635.m04042
TID=OsAffx.28846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4047011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28846.1.S1_at--639--6691Chr07:24248881..24248905 (25 bp)
GTTCCACGCTCAAGTTCATGCTCTA
LOC_Os07g40470
OsAffx.28846.1.S1_at--959--411Chr07:24248976..24249000 (25 bp)
ATCATAGTGTGCAACCTCGGCGGTG
LOC_Os07g40470
OsAffx.28846.1.S1_at--983--7731Chr07:24248997..24249021 (25 bp)
GGTGTCATCGCCGTTCTTGAGGACA
LOC_Os07g40470
OsAffx.28846.1.S1_at--395--9591Chr07:24249011..24249035 (25 bp)
TCTTGAGGACATCGCCGGAGTCAGC
LOC_Os07g40470
OsAffx.28846.1.S1_at--810--8251Chr07:24249067..24249091 (25 bp)
GGCAGACGCATGTCGGCTTGCTCAT
LOC_Os07g40470
OsAffx.28846.1.S1_at--468--9611Chr07:24249088..24249112 (25 bp)
TCATCTTTCTTGGATCCACCATTGG
LOC_Os07g40470
OsAffx.28846.1.S1_at--1116--8871Chr07:24249167..24249191 (25 bp)
TGATGGCTCATCAAGGCTCTGGGAG
LOC_Os07g40470
OsAffx.28846.1.S1_at--1065--7552Chr07:24249192..24249216 (25 bp)
GGGCCATTGCTTGTCCTCATGTACT
LOC_Os07g40470
OsAffx.28846.1.S1_at--388--9631Chr07:24249208..24249232 (25 bp)
TCATGTACTCCTTCGTGATGCTCAT
LOC_Os07g40470
OsAffx.28846.1.S1_at--1091--6291Chr07:24249239..24249263 (25 bp)
GATGATGAGTGTCGTGTTCTACTTC
LOC_Os07g40470
OsAffx.28846.1.S1_at--68--7431Chr07:24249252..24249276 (25 bp)
GTGTTCTACTTCACTTGCCGATCAT
LOC_Os07g40470
Target Sequence 
GTTCCACGCTCAAGTTCATGCTCTACCCGCCCGACATCGTCGTCTGCGCCGGCCTCCTCACCGTTCTTGCCTTCTCCGTG
GCGTACGCGCACACCATCATAGTGTGCAACCTCGGCGGTGTCATCGCCGTTCTTGAGGACATCGCCGGAGTCAGCGCGCT
GCGCCGGTCAGTGCAGCTGATGCGCGGGCAGACGCATGTCGGCTTGCTCATCTTTCTTGGATCCACCATTGGCCTCGCCT
TCGTGGAGGGGCTGTTTGAGCACAGGGTGAAGACACTGAGCTATGGTGATGGCTCATCAAGGCTCTGGGAGGGGCCATTG
CTTGTCCTCATGTACTCCTTCGTGATGCTCATCGACTCGATGATGAGTGTCGTGTTCTACTTCACTTGCCGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis