Browse Element(s) Details


Os.11524.1.S1_at

Description gb:AK120222.1
DB_XREF= gi:37989845
TID=Os.11524.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041H24, full insert sequence.
FL= gb:AK120222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4051011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative
LOC_Os07g40530Os.40360.1.S1_x_at1/117+24284186..24284809hypothetical protein
LOC_Os07g40540Os.47130.4.A1_x_at3/117+24288723..24288980retrotransposon protein, putative, unclassified
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11524.1.S1_at--184--2551Chr07:24265383..24265407 (25 bp)
AACTCTGTTGTTGCGCTTATGATCT
LOC_Os07g40510
Os.11524.1.S1_at--969--3651Chr07:24265368..24265392 (25 bp)
CTTATGATCTGCATGCTGGGCGAAT
LOC_Os07g40510
Os.11524.1.S1_at--859--8651Chr07:24265352..24265376 (25 bp)
TGGGCGAATGCATGACCTGCTCGAT
LOC_Os07g40510
Os.11524.1.S1_at--863--1531Chr07:24265275..24265299 (25 bp)
AGCATGGCTGCACCATAGCAACTGT
LOC_Os07g40510
Os.11524.1.S1_at--561--291Chr07:24265261..24265285 (25 bp)
ATAGCAACTGTACATGACGCCCTTT
LOC_Os07g40510
Os.11524.1.S1_at--292--691Chr07:24265161..24265272 (25 bp)
ATGACGCCCTTTACGTTCGCACTAG
LOC_Os07g40510
Os.11524.1.S1_at--1100--9311Chr07:24265145..24265169 (25 bp)
TCGCACTAGCGATGGCCGGTTTTTT
LOC_Os07g40510
Os.11524.1.S1_at--321--4351Chr07:24265098..24265122 (25 bp)
CCAGTGGCAACTTCTGACTGCTGTA
LOC_Os07g40510
Os.11524.1.S1_at--840--4831Chr07:24265056..24265080 (25 bp)
GCAAAGCTAACATCATTCGTTTTTT
LOC_Os07g40510
Os.11524.1.S1_at--824--10371Chr07:24265023..24265047 (25 bp)
TTTTATGTTACTTGTCCATTCTTTC
LOC_Os07g40510
Os.11524.1.S1_at--641--7351Chr07:24264785..24264809 (25 bp)
GTGAATGCAGCAGCTTTTCCATGAT
LOC_Os07g40510
Target Sequence 
AACTCTGTTGTTGCGCTTATGATCTGCATGCTGGGCGAATGCATGACCTGCTCGATGCACGGGGNGGGCAAGAAAAGTTG
TGTAAATGATGCAGCCATCAATGGAAACAGCATGGCTGCACCATAGCAACTGTACATGACGCCCTTTACGTTCGCACTAG
CGATGGCCGGTTTTTTTCTCTTCGGCCAGCAGGGCCGCCCAGTGGCAACTTCTGACTGCTGTAAAGAACTAACACTAACA
GCAAAGCTAACATCATTCGTTTTTTNCCTTTGTTTTTTATGTTACTTGTCCATTCTTTCTAANCCCCAGTGGCCAAGTGC
AGCCAATGCTTCAGNAGTAGAGCCTCNTAGTATNGTAGTAGGTAGGTAGNAATTGTACAAATAGGAACAGGNAAAGGGTA
NGGAAACCATNTGGGGCGGAGAAATTGTANCTGGGATNTATACNAGATGTAAACATGCGTGTGCTTCANGNATATTTTTT
TTTGTAGTGAATGNACCAAGGTTTTCATNATTAGTGAATGCAGCAGCTTTTCCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis