Browse Element(s) Details


Os.22263.1.S1_a_at

Description gb:AK067238.1
DB_XREF= gi:32977256
TID=Os.22263.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G09, full insert sequence.
FL= gb:AK067238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4055011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative
LOC_Os07g40530Os.40360.1.S1_x_at1/117+24284186..24284809hypothetical protein
LOC_Os07g40540Os.47130.4.A1_x_at3/117+24288723..24288980retrotransposon protein, putative, unclassified
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed
LOC_Os07g40560NANA7+24306547..24307191hypothetical protein
LOC_Os07g40570Os.23384.1.A1_at11/117+24310208..24313688WRKY DNA binding domain containing protein, expressed
LOC_Os07g40580Os.6385.1.S1_at11/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40580Os.57480.1.S1_x_at1/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22263.1.S1_a_at--472--7951Chr07:24291561..24291585 (25 bp)
GGATATGTCAGTTTCTGGTGTCTTC
LOC_Os07g40550
Os.22263.1.S1_a_at--17--8631Chr07:24291546..24291570 (25 bp)
TGGTGTCTTCTGTCAACCGGAAACT
LOC_Os07g40550
Os.22263.1.S1_a_at--1141--8131Chr07:24291528..24291552 (25 bp)
GGAAACTCGCCTTTGGTGGTAACAT
LOC_Os07g40550
Os.22263.1.S1_a_at--505--2451Chr07:24291449..24291473 (25 bp)
AAAATCAAAACTGTGCCTCGCTGCT
LOC_Os07g40550
Os.22263.1.S1_a_at--569--2071Chr07:24291410..24291434 (25 bp)
ACTTGTCGCTTGTTGTAGATTCCCC
LOC_Os07g40550
Os.22263.1.S1_a_at--360--6951Chr07:24291396..24291420 (25 bp)
GTAGATTCCCCAAAGACTCCTGTGT
LOC_Os07g40550
Os.22263.1.S1_a_at--175--2771Chr07:24291384..24291408 (25 bp)
AAGACTCCTGTGTCACACCATAGAA
LOC_Os07g40550
Os.22263.1.S1_a_at--299--9491Chr07:24291334..24291358 (25 bp)
TCTCCACCTTGTGCCTAGGAATAAC
LOC_Os07g40550
Os.22263.1.S1_a_at--218--5031Chr07:24291218..24291242 (25 bp)
GCAGTTCTTGTAAAGCTAACCTCTG
LOC_Os07g40550
Os.22263.1.S1_a_at--229--5531Chr07:24291179..24291203 (25 bp)
GAAAACGTATTATCCCATCGATGTA
LOC_Os07g40550
Os.22263.1.S1_a_at--727--511Chr07:24291163..24291187 (25 bp)
ATCGATGTATCCCTTGCTGGTGATG
LOC_Os07g40550
Target Sequence 
GGATATGTCAGTTTCTGGTGTCTTCTGTCAACCGGAAACTCGCCTTTGGTGGTAACATTGTTGATAAGATTAAGACCCAA
CTGAAAACATTATATGATTCTCATATCATAGTAAAATCAAAACTGTGCCTCGCTGCTTCTACTAGATAATAACTTGTCGC
TTGTTGTAGATTCCCCAAAGACTCCTGTGTCACACCATAGAATGGAATGGTGTTTTTTTTTTTTCTCCTCTCCACCTTGT
GCCTAGGAATAACAGCTGACGAGAGTGGTTAATTCGAGTGATCATTGTGTTGAACCAATCAGTTATTATTTGTGTAGCTG
AACCAATAACCACCACAGAATGGTGCAGTTCTTGTAAAGCTAACCTCTGTAAAAAGTAGAACAGAAAACGTATTATCCCA
TCGATGTATCCCTTGCTGGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22263.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis