Browse Element(s) Details


OsAffx.5586.1.S1_at

Description tigr:9635.m04047
TID=OsAffx.5586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4052011/11formin homology 2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g40520OsAffx.5586.1.S1_at11/117+24272482..24275261formin homology 2 domain-containing protein, putative
LOC_Os07g40530Os.40360.1.S1_x_at1/117+24284186..24284809hypothetical protein
LOC_Os07g40540Os.47130.4.A1_x_at3/117+24288723..24288980retrotransposon protein, putative, unclassified
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5586.1.S1_at--442--6791Chr07:24273005..24273029 (25 bp)
GTTATCTCCCAGAATTTAGGTTGCA
LOC_Os07g40520
OsAffx.5586.1.S1_at--719--10031Chr07:24272973..24272997 (25 bp)
TAGACCAGTAAGTGCACCTGCAGAA
LOC_Os07g40520
OsAffx.5586.1.S1_at--652--8111Chr07:24272871..24272895 (25 bp)
GGACGACAATGCTGTGCAGGACATA
LOC_Os07g40520
OsAffx.5586.1.S1_at--368--5671Chr07:24272852..24272876 (25 bp)
GACATACAAGTGGTTGCTGCCTCTG
LOC_Os07g40520
OsAffx.5586.1.S1_at--664--8571Chr07:24272842..24272866 (25 bp)
TGGTTGCTGCCTCTGTAGATTCAGA
LOC_Os07g40520
OsAffx.5586.1.S1_at--171--10451Chr07:24272756..24272780 (25 bp)
TTAGTCACCGCAATAGATCCAAGTT
LOC_Os07g40520
OsAffx.5586.1.S1_at--1005--5331Chr07:24272723..24272747 (25 bp)
GAAGTTCAGTGCCAACCAGACGAAT
LOC_Os07g40520
OsAffx.5586.1.S1_at--1150--9951Chr07:24272681..24272705 (25 bp)
TACCCTAATTTGGACTATACTGGAT
LOC_Os07g40520
OsAffx.5586.1.S1_at--878--311Chr07:24272665..24272689 (25 bp)
ATACTGGATTCAGCTCTCCTAGAAC
LOC_Os07g40520
OsAffx.5586.1.S1_at--779--4791Chr07:24272653..24272677 (25 bp)
GCTCTCCTAGAACTTTATCCAGTGT
LOC_Os07g40520
OsAffx.5586.1.S1_at--72--6171Chr07:24272624..24272648 (25 bp)
GAGGATACCCGCTTAGGAACTATAC
LOC_Os07g40520
Target Sequence 
GTTATCTCCCAGAATTTAGGTTGCATGAGTGATAGACCAGTAAGTGCACCTGCAGAAATTTTGGGAAACCCTGGAGGTTT
GCAGCAGGCGTGTGAGAATGAGGAGATGCCCAAATTAAGCAACAGAAGTGACCAGGACGACAATGCTGTGCAGGACATAC
AAGTGGTTGCTGCCTCTGTAGATTCAGAGGGGCACAAATTTGGATCCATCTGTCAGAAGGAGGACATGAAAGGTGTAATT
GCACAAACTTTAGTCACCGCAATAGATCCAAGTTGCAGTGATGAAGTTCAGTGCCAACCAGACGAATCTGCAAAAATATT
GAAATACCCTAATTTGGACTATACTGGATTCAGCTCTCCTAGAACTTTATCCAGTGTGGATGAGGATACCCGCTTAGGAA
CTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis