Browse Element(s) Details


Os.11003.1.S1_at

Description gb:AK066349.1
DB_XREF= gi:32976367
TID=Os.11003.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062C05, full insert sequence.
FL= gb:AK066349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4046011/11Prefoldin subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0016272cellular_componentprefoldin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11003.1.S1_at--75--9871Chr07:24245110..24245134 (25 bp)
TACACTCATCTCATCGCAAGCATAA
LOC_Os07g40460
Os.11003.1.S1_at--880--5311Chr07:24245251..24245275 (25 bp)
GAAGGTATCCGCGAACTACTCGAGC
LOC_Os07g40460
Os.11003.1.S1_at--442--10831Chr07:24245338..24245362 (25 bp)
TTGTGCTTTTGCTTTTCTCACGAAG
LOC_Os07g40460
Os.11003.1.S1_at--212--8611Chr07:24245366..24245390 (25 bp)
TGGTCGCCCATCTTCGAACATGAAA
LOC_Os07g40460
Os.11003.1.S1_at--1100--9011Chr07:24245526..24245550 (25 bp)
TGCAACTTCTGATCTTCCCTAGATT
LOC_Os07g40460
Os.11003.1.S1_at--37--10051Chr07:24245545..24245569 (25 bp)
TAGATTCCCAAGTCATAGTGTACAT
LOC_Os07g40460
Os.11003.1.S1_at--544--9871Chr07:24245565..24245589 (25 bp)
TACATGGCATGCCTTGGAAGCTCAT
LOC_Os07g40460
Os.11003.1.S1_at--967--8272Chr07:24245590..24245614 (25 bp)
GGCATGTTCCATTTTGTCATTAGAT
LOC_Os07g40460
Os.11003.1.S1_at--515--7591Chr07:24245699..24245723 (25 bp)
GGGCTATTGGCACTTCATCTGGTAA
LOC_Os07g40460
Os.11003.1.S1_at--254--2711Chr07:24245730..24245754 (25 bp)
AAGCTTTTGCCTTTGCCGCGAAGCT
LOC_Os07g40460
Os.11003.1.S1_at--126--4791Chr07:24245752..24245776 (25 bp)
GCTGCCTTATTGTCTTTTCCACTTT
LOC_Os07g40460
Target Sequence 
TACACTCATCTCATCGCAAGCATAAAAGCGCAGATCAAGTTGGTATGTGAAGGTATCCGCGAACTACTCGAGCTACCAGC
AGAGTAAAGGTGAAAGTTGGCAATGCAATCGTATGGGGGTGCTTGGTAGAATGACTTGTGCTTTTGCTTTTCTCACGAAG
GCATGGTCGCCCATCTTCGAACATGAAAGATTTTACATGTACTGTTGTGCAAAAGATGGTTTCATACACTCATCCNCTGT
AATAACATTCATCTAATCAGATTAACTACAGTAGAATTTCGCNATGTGAAATCAACGCAAACACTGTGAAAACTTGTTGG
TTGATGCAACTTCTGATCTTCCCTAGATTCCCAAGTCATAGTGTACATGGCATGCCTTGGAAGCTCATGGCATGTTCCAT
TTTGTCATTAGATTAGAACAATGAAAGGAAGTTAGGAACATGCCATTTTGCATATAGATGTGTCAGTCAAGACAGCAGAG
CAAGGAAAGTATATATTGGGCTATTGGCACTTCATCTGGTAAGGCATAAAGCTTTTGCCTTTGCCGCGAAGCTGCCTTAT
TGTCTTTTCCACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis