Browse Element(s) Details


OsAffx.2927.1.S1_at

Description tigr:9630.m03905
TID=OsAffx.2927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4042011/11expressed protein
LOC_Os07g404601/11Prefoldin subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40400OsAffx.2926.1.S1_at11/112+24456379..24461846expressed protein
LOC_Os02g40410OsAffx.24660.1.S1_x_at11/112+24465676..24471502expressed protein
LOC_Os02g40410Os.51371.1.S1_at11/112+24465676..24471502expressed protein
LOC_Os02g40420OsAffx.2927.1.S1_at11/112+24477121..24481565expressed protein
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0016272cellular_componentprefoldin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2927.1.S1_at--1119--7931Chr02:24477683..24477707 (25 bp)
GGATCAGTTACCTGCGAAATTCACT
LOC_Os02g40420
OsAffx.2927.1.S1_at--803--8171Chr02:24477631..24477655 (25 bp)
GGAACTCTGGATCATCAACATCATC
LOC_Os02g40420
OsAffx.2927.1.S1_at--117--1931Chr02:24477555..24477579 (25 bp)
ACGGTGCTTGTTTGAACTCTCTATC
LOC_Os02g40420
OsAffx.2927.1.S1_at--491--10151Chr02:24477534..24477558 (25 bp)
TATCGCCATACACAGATCATCCTTG
LOC_Os02g40420
OsAffx.2927.1.S1_at--132--5511Chr02:24477498..24477522 (25 bp)
GAAAAGGCTTGTGTGACTCTTCCAC
LOC_Os02g40420
OsAffx.2927.1.S1_at--933--31Chr02:24477470..24477494 (25 bp)
ATTGTGGTCATCAGTGCATCATCTC
LOC_Os02g40420
OsAffx.2927.1.S1_at--83--8091Chr02:24477424..24477448 (25 bp)
GGAGCTGTACTTGGCTTCATGTCAG
LOC_Os02g40420
OsAffx.2927.1.S1_at--121--2811Chr02:24477375..24477399 (25 bp)
AAGATCACTGCAGCTTCATGTTAGC
LOC_Os02g40420
OsAffx.2927.1.S1_at--342--3012Chr07:24245332..24245542 (25 bp)
AATGACTTGTGCACTTCTGATCTTC
LOC_Os07g40460
OsAffx.2927.1.S1_at--218--6871Chr02:24477303..24477327 (25 bp)
GTTTGTGCTCTGCTATGGATGGCAT
LOC_Os02g40420
OsAffx.2927.1.S1_at--609--4911Chr02:24477271..24477295 (25 bp)
GCTTCTGTGCGTCTTGATGGCCTAA
LOC_Os02g40420
Target Sequence 
GGATCAGTTACCTGCGAAATTCACTTATACAAGCTTTTCAAACTACATATCTGGAACTCTGGATCATCAACATCATCTCA
GATATATGCCTCCAAAGGACAGCAGTAGTACTTTGTTCATGGATGCAAACGGTGCTTGTTTGAACTCTCTATCGCCATAC
ACAGATCATCCTTGTAAGCAAGATGGAAAAGGCTTGTGTGACTCTTCCACAGAATTGTGGTCATCAGTGCATCATCTCCA
ATCTCATGATGATGATTTTGGAGCTGTACTTGGCTTCATGTCAGAGGAAAATACTTACAATGATTTGGAAGATCACTGCA
GCTTCATGTTAGCTGAAGGAAACCCAAATGACTTGTGCACTTCTGATCTTCCATTATTTGGTTTGTGCTCTGCTATGGAT
GGCATCAGGGAGGCTTCTGTGCGTCTTGATGGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis