Browse Element(s) Details


Os.47492.1.A1_s_at

Description gb:BX899660
DB_XREF= gi:40489831
DB_XREF=BX899660
CLONE=y804a05p3
TID=Os.47492.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47492 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_179609.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g404302/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40400OsAffx.2926.1.S1_at11/112+24456379..24461846expressed protein
LOC_Os02g40410OsAffx.24660.1.S1_x_at11/112+24465676..24471502expressed protein
LOC_Os02g40410Os.51371.1.S1_at11/112+24465676..24471502expressed protein
LOC_Os02g40420OsAffx.2927.1.S1_at11/112+24477121..24481565expressed protein
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed
LOC_Os02g40440Os.55447.1.S1_at11/112+24510505..24512299GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g40450OsAffx.24661.1.S1_at11/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40450Os.54715.1.S1_x_at10/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47492.1.A1_s_at--783--6331Chr02:24484282..24484306 (25 bp)
GATGCTTTCAATAACCAGAGTCCAG
LOC_Os02g40430
Os.47492.1.A1_s_at--717--2711Chr02:24483337..24483361 (25 bp)
AAGCATTTGTACCATATCTAGAGGG
LOC_Os02g40430
Os.47492.1.A1_s_at--89--6351Chr02:24483236..24483260 (25 bp)
GATGCTAACCACTAGATCATATTGT
NONE
Os.47492.1.A1_s_at--1087--6791Chr02:24483213..24483237 (25 bp)
GTTTTGTGTATCATATGGGTATCTC
NONE
Os.47492.1.A1_s_at--444--7691Chr02:24483197..24483221 (25 bp)
GGGTATCTCTTTGGATGAGCTGGTT
NONE
Os.47492.1.A1_s_at--661--5891Chr02:24483181..24483205 (25 bp)
GAGCTGGTTTCATTCATTCGATCTG
NONE
Os.47492.1.A1_s_at--393--5651Chr02:24483147..24483171 (25 bp)
GACAGATGCCGTTCATGTATTGAGC
NONE
Os.47492.1.A1_s_at--557--6871Chr02:24483131..24483155 (25 bp)
GTATTGAGCAGTTGGCTTTTCGTGT
NONE
Os.47492.1.A1_s_at--597--4891Chr02:24483117..24483141 (25 bp)
GCTTTTCGTGTGTGTATGTATTCCT
NONE
Os.47492.1.A1_s_at--298--6771Chr02:24483043..24483067 (25 bp)
GTTAACTTGTACTACCATCACACTG
NONE
Os.47492.1.A1_s_at--168--7731Chr02:24482961..24482985 (25 bp)
GGTGGGCATATCCTTGTGCTGTAAA
NONE
Target Sequence 
GATGCTTTCAATAACCAGAGTCCAGATGTTCGCAAGACTGTTGTATTNTGCTTGGTGGATATCTACATTATGCTTGGGAA
AGCATTTGTACCATATCTAGAGGGGCTTAATAGCACGCAGCTGCGCCTAGTAACNATCTATGCAAACAGGATATCACAGG
CAAGGTNTGGTGCACCGATTGATGCTAACCACTAGATCATATTGTTTTGTGTATCATATGGGTATCTCTTTGGATGAGCT
GGTTTCATTCATTCGATCTGTATATAACAGACAGATGCCGTTCATGTATTGAGCAGTTGGCTTTTCGTGTGTGTATGTAT
TCCTTTTATTTTNGTTTCCTTTTCCCCTTGTGTGCAGAGGCATTGAGTTATGCGTTAACTTGTACTACCATCACACTGTN
CAAANANNACAGGATGTAGCTGNCTGTTTTCCCTTGTTTACCTGAGGGGTTTGTTGGTGGGCATATCCTTGTGCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47492.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis