Browse Element(s) Details


OsAffx.24661.1.S1_at

Description tigr:9630.m03908
TID=OsAffx.24661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to helicase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4045011/11ROCK-N-ROLLERS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed
LOC_Os02g40440Os.55447.1.S1_at11/112+24510505..24512299GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g40450OsAffx.24661.1.S1_at11/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40450Os.54715.1.S1_x_at10/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40460Os.37362.1.S1_at11/112+24525423..24528954S1 RNA binding domain containing protein, expressed
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0007131biological_processmeiotic recombination
GO:0051026biological_processchiasma formation
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24661.1.S1_at--598--5671Chr02:24520782..24520806 (25 bp)
GACATCGGGCGATCAGTTTGGACTA
LOC_Os02g40450
OsAffx.24661.1.S1_at--723--5331Chr02:24520831..24520855 (25 bp)
GAAGTCACGCCTATGGTCTTTGATC
LOC_Os02g40450
OsAffx.24661.1.S1_at--475--4031Chr02:24520855..24520879 (25 bp)
CGTACTGAGGCTAGAGTCTCTCCAA
LOC_Os02g40450
OsAffx.24661.1.S1_at--283--6351Chr02:24520931..24520955 (25 bp)
GATCCTTTCAGTTTACGGGCAAAAT
LOC_Os02g40450
OsAffx.24661.1.S1_at--608--3211Chr02:24521001..24521025 (25 bp)
CAAAAACTCTACTCAACTTGCGGGT
LOC_Os02g40450
OsAffx.24661.1.S1_at--957--2931Chr02:24521110..24521134 (25 bp)
AAGGCTCTAAGCAAGACTCCAGATG
LOC_Os02g40450
OsAffx.24661.1.S1_at--72--4911Chr02:24521192..24521216 (25 bp)
GCTTCAGCAGTCCTCTTGCAGATTT
LOC_Os02g40450
OsAffx.24661.1.S1_at--952--6511Chr02:24521212..24521236 (25 bp)
GATTTCCAGCCTATGCAATGTACAA
LOC_Os02g40450
OsAffx.24661.1.S1_at--745--2331Chr02:24521235..24521259 (25 bp)
AAAGCAAGTTGCAGCCTCAGTCCAA
LOC_Os02g40450
OsAffx.24661.1.S1_at--1071--1131Chr02:24521253..24521277 (25 bp)
AGTCCAACCTCTCACGATTCAGGAT
LOC_Os02g40450
OsAffx.24661.1.S1_at--541--1531Chr02:24521308..24521332 (25 bp)
AGCAGTGGGACTGGCGCATCTTTTC
LOC_Os02g40450
Target Sequence 
GACATCGGGCGATCAGTTTGGACTAGATCAGAGCAGTCTGCATGCATATGAAGTCACGCCTATGGTCTTTGATCGTACTG
AGGCTAGAGTCTCTCCAAACAATACAGATGAGAGGTGCCGCAACATCCTGACCAGAACTGCAGAAACTAGATCCTTTCAG
TTTACGGGCAAAATGGACAGTATATCTCAGAAGAGCGAGATCCTGAACAGAACTCAAGGCAAAAACTCTACTCAACTTGC
GGGTAAAAAAGCATTTGAAAAGAGCAAGACCCCAGATGAGAATTCACTTCACTTTGTAGGTAAAAGGGACAGCTCGTCTG
AGAAAAGCAAGGCTCTAAGCAAGACTCCAGATGAGAATTCTCTTCAGTTTTTAGGTAAAATGGACAGCTCATCTGAGAAG
AGCAAATTCTGCTTCAGCAGTCCTCTTGCAGATTTCCAGCCTATGCAATGTACAAAGCAAGTTGCAGCCTCAGTCCAACC
TCTCACGATTCAGGATTATTGCAAGGATATTTTGGCGAGTGCAAAGAGCAGTGGGACTGGCGCATCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis