Browse Element(s) Details


Os.54715.1.S1_x_at

Description gb:AK106578.1
DB_XREF= gi:32991787
TID=Os.54715.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C08, full insert sequence.
FL= gb:AK106578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4045010/11ROCK-N-ROLLERS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed
LOC_Os02g40440Os.55447.1.S1_at11/112+24510505..24512299GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g40450OsAffx.24661.1.S1_at11/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40450Os.54715.1.S1_x_at10/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40460Os.37362.1.S1_at11/112+24525423..24528954S1 RNA binding domain containing protein, expressed
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific
LOC_Os02g40480NANA2+24539576..24542719retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0007131biological_processmeiotic recombination
GO:0051026biological_processchiasma formation
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54715.1.S1_x_at--672--5551Chr02:24516909..24516933 (25 bp)
GAAATTCCACGTGAACTTCTTGAAA
LOC_Os02g40450
Os.54715.1.S1_x_at--954--5431Chr02:24518155..24518179 (25 bp)
GAACCTGGGAGGCTGATGACAAAAT
LOC_Os02g40450
Os.54715.1.S1_x_at--105--51Chr02:24518209..24518233 (25 bp)
ATTGTCAAAGCTTCTGCCTGTTGCA
LOC_Os02g40450
Os.54715.1.S1_x_at--842--4471Chr02:24518224..24518248 (25 bp)
GCCTGTTGCACTTTGGAAGATCTGT
LOC_Os02g40450
Os.54715.1.S1_x_at--566--6411Chr02:24518242..24518266 (25 bp)
GATCTGTTGCATATCATCTGCCACT
LOC_Os02g40450
Os.54715.1.S1_x_at--868--4871Chr02:24518424..24518448 (25 bp)
GCTTTGGTTCCATGTTGTTGGTGCA
LOC_Os02g40450
Os.54715.1.S1_x_at--732--7631Chr02:24518522..24518546 (25 bp)
GGGACCCTCTAGTCCATGATCTATC
LOC_Os02g40450
Os.54715.1.S1_x_at--63--4331NONE
CCATGATCTATCTCTCAACCAGGAA
NONE
Os.54715.1.S1_x_at--595--611Chr02:24518655..24518679 (25 bp)
ATGCTCAAATGGATGCAGGGTTGCC
LOC_Os02g40450
Os.54715.1.S1_x_at--470--7171Chr02:24518721..24518745 (25 bp)
GTCTGCCATAAGTTCTATGCTCCTT
LOC_Os02g40450
Os.54715.1.S1_x_at--211--9551Chr02:24518734..24518758 (25 bp)
TCTATGCTCCTTGCGAAATGCTTAC
LOC_Os02g40450
Target Sequence 
GAAATTCCACGTGAACTTCTTGAAAAGCAAATGAAAGATATATGTGTTGAGAAGATCCATGAGCTGGGGGAGTATGGTCT
AATTTGGACAGATGANGATGGTTTCCTTCTAAAACCATTAGAACCTGGGAGGCTGATGACAAAATTCTNTCTGAAATTTG
ATACTATGAAGCTTATTGTCAAAGCTTCTGCCTGTTGCACTTTGGAAGATCTGTTGCATATCATCTGCCACTCTGCAGAG
ATTACTTGNNNNGATCCAACTACGACGAAATGAGAAGAAGCTCCTTAATGAGATAAATGCTGACAAAGAGGGAAGGCTTT
GGTTCCATGTTGTTGGTGCAAATGGGAAAAGGAAGAAGCGTATTCAAACAAGAGAAGAAAAAATATTTATTCTGGCAAAT
GATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAGGAAATGAATTCAATATGCTCAAATGGATGCAG
GGTTGCCAAATGCATGAGAGAATATTTTATATACAAAAAGAATTACAAGTCTGCCATAAGTTCTATGCTCCTTGCGAAAT
GCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54715.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis